RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 EIF4EBP2Q13542 120 aaPredicted RBP13.41□□□□□ -0.26
SKA3-202ENST00000314759 DUSP28Q4G0W2 176 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 LDLRAP1Q5SW96 308 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 NIPAL1Q6NVV3 410 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 FAM117BQ6P1L5 589 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 COLGALT2Q8IYK4 626 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 PTGR2Q8N8N7 351 aaPredicted RBP13.41□□□□□ -0.26
SKA3-202ENST00000314759 OR6P1Q8NGX9 317 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 DNAJB14Q8TBM8 379 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 SMARCD1Q96GM5 515 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 MTG1Q9BT17 334 aaPredicted RBP13.41□□□□□ -0.26
SKA3-202ENST00000314759 RMI1Q9H9A7 625 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 GID8Q9NWU2 228 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 PTCH2Q9Y6C5 1203 aa13.41□□□□□ -0.26
SKA3-202ENST00000314759 ZFC3H1O60293 1989 aaKnown RBP13.41□□□□□ -0.26
SKA3-202ENST00000314759 AZIN1O14977 448 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 ZBTB7AO95365 584 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 MATN4O95460 622 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 IGLV3-25P01717 112 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 LINC00032P0C843 101 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 HGFP14210 728 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 HOXC13P31276 330 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 RPS9P46781 194 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 TMED10P49755 219 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 GSK3BP49841 420 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 SERPINH1P50454 418 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 AFF1P51825 1210 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 RAB15P59190 212 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 BLOC1S3Q6QNY0 202 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 BTLAQ7Z6A9 289 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 RYBPQ8N488 228 aaPredicted RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 TMEM125Q96AQ2 219 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 TUBGCP3Q96CW5 907 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 PPP1R2P1Q96PQ5 205 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 A0A1B0GTL3 188 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 MBLAC1A4D2B0 266 aaPredicted RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 H3BMM5 538 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 SNAP91O60641 907 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 BAIAP3O94812 1187 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 SLC4A1P02730 911 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 MT-ND1P03886 318 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 CD1DP15813 335 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 SLC26A3P40879 764 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 DIO3P55073 304 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 IHHQ14623 411 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 CCDC92Q53HC0 331 aaPredicted RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 MANEALQ5VSG8 457 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 USP51Q70EK9 711 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 ZNF354CQ86Y25 554 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 DCP1BQ8IZD4 617 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 C3orf58Q8NDZ4 430 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 VPS33AQ96AX1 596 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 FCRL2Q96LA5 508 aaPredicted RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 ALG2Q9H553 416 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 CATSPERBQ9H7T0 1116 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 ZFYVE28Q9HCC9 887 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 CSNK1G1Q9HCP0 422 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 ATP13A1Q9HD20 1204 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 MPP6Q9NZW5 540 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 POLG2Q9UHN1 485 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 ERGIC3Q9Y282 383 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 BTRCQ9Y297 605 aa13.4□□□□□ -0.26
SKA3-202ENST00000314759 BRCA1P38398 1863 aaKnown RBP13.4□□□□□ -0.26
SKA3-202ENST00000314759 CFAP99D6REC4 459 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 UBXN8O00124 270 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 FGF10O15520 208 aaPredicted RBP13.4□□□□□ -0.27
SKA3-202ENST00000314759 DYNC1LI2O43237 492 aaPredicted RBP13.4□□□□□ -0.27
SKA3-202ENST00000314759 E2F6O75461 281 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 FCGR1AP12314 374 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 CYP2C18P33260 490 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 MAXP61244 160 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 RPS6KA2Q15349 733 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 PFKFB4Q16877 469 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 RGS21Q2M5E4 152 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 KANK2Q63ZY3 851 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 TIGD7Q6NT04 549 aaPredicted RBP13.4□□□□□ -0.27
SKA3-202ENST00000314759 TBPL2Q6SJ96 375 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 GALNT7Q86SF2 657 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 TEX37Q96LM6 180 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 C8orf4Q9NR00 106 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 GNPTGQ9UJJ9 305 aa13.4□□□□□ -0.27
SKA3-202ENST00000314759 FAM32AQ9Y421 112 aaKnown RBP13.4□□□□□ -0.27
SKA3-202ENST00000314759 OAS3Q9Y6K5 1087 aaKnown RBP13.4□□□□□ -0.27
SKA3-202ENST00000314759 IRAK2O43187 625 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 SLC7A4O43246 635 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 MSI1O43347 362 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 MTHFD2P13995 350 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 LBPP18428 481 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 MAP4P27816 1152 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 CLCNKBP51801 687 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 TIAL1Q01085 375 aaKnown RBP eCLIP13.39□□□□□ -0.27
SKA3-202ENST00000314759 OR4D1Q15615 310 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 AFMIDQ63HM1 303 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 TWF2Q6IBS0 349 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 IGFN1Q86VF2 1251 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 TMEM86AQ8N2M4 240 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 SCAMP5Q8TAC9 235 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 GABPB2Q8TAK5 448 aaPredicted RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 SLC25A51Q9H1U9 297 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 RGS18Q9NS28 235 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms