RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 C4orf46Q504U0 113 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 AADACL2Q6P093 401 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 METTL7BQ6UX53 244 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 CUZD1Q86UP6 607 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 GALNT15Q8N3T1 639 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 ANKRA2Q9H9E1 313 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 ATP6AP2A0A1C7CYW4 349 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ELOVL7A1L3X0 281 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ATP6AP2O75787 350 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 SREBF2Q12772 1141 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CYP4X1Q8N118 509 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CCDC54Q8NEL0 328 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 DUSP9Q99956 384 aaKnown RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 BLOC1S4Q9NUP1 217 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 IKZF2Q9UKS7 526 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 MYH8P13535 1937 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 A0A0G2JLW4 131 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 IFI30P13284 250 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 PPP3R1P63098 170 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 TIGD2Q4W5G0 525 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 EIF5AL1Q6IS14 154 aaKnown RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CHST4Q8NCG5 386 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ING5Q8WYH8 240 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 DMRTB1Q96MA1 342 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 RAB23Q9ULC3 237 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CCNDBP1O95273 360 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF157P51786 506 aaPredicted RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 THOP1P52888 689 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 SLC5A3P53794 718 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 RBM15BQ8NDT2 890 aaKnown RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 LINGO1Q96FE5 620 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 BRD9Q9H8M2 597 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 SOHLH2Q9NX45 425 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 A8MX80 341 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 TNFRSF11BO00300 401 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 TRBC1P01850 177 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CHKAP35790 457 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 PTPRNQ16849 979 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 MPPE1Q53F39 396 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 FAM91A1Q658Y4 838 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 GK5Q6ZS86 529 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CLIP3Q96DZ5 547 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 RNF157Q96PX1 679 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 COMMD4Q9H0A8 199 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 PDE2AO00408 941 aaPredicted RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 FPGTO14772 594 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 YES1P07947 543 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 AZGP1P25311 298 aaKnown RBP13.83□□□□□ -0.2
CSPG4-201ENST00000308508 GPD2P43304 727 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ACAP2Q15057 778 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 TMEM192Q8IY95 271 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF563Q8TA94 476 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 EPS8L1Q8TE68 723 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 PNPOQ9NVS9 261 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 MARCH2Q9P0N8 246 aa13.83□□□□□ -0.2
CSPG4-201ENST00000308508 CLTCL1P53675 1640 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PDCD5O14737 125 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 IGFALSP35858 605 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 IFNLR1Q8IU57 520 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 UFD1Q92890 307 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 A8MUI8 341 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 LACTBL1A8MY62 500 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PPEF2O14830 753 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CTSEP14091 401 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 FSHRP23945 695 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 FCGRTP55899 365 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 STXBP1P61764 594 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 USP41Q3LFD5 358 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF410Q86VK4 478 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF285Q96NJ3 590 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 AP1S3Q96PC3 154 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 ALG2Q9H553 416 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 MAU2Q9Y6X3 613 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 NDUFS2O75306 463 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CSDE1O75534 798 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PAPSS2O95340 614 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CES1P23141 567 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 DNASE1L1P49184 302 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CPSF6Q16630 551 aaKnown RBP eCLIP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 SCIMPQ6UWF3 145 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 SNX20Q7Z614 316 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CXorf40AQ8TE69 158 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 OSMRQ99650 979 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 EXO5Q9H790 373 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PLEKHA1Q9HB21 404 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 DNAJC11Q9NVH1 559 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 EFCAB9A8MZ26 197 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PITPNM1O00562 1244 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 FESP07332 822 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 MARSP56192 900 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CNPY1Q3B7I2 92 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 DCST1Q5T197 706 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CHSY3Q70JA7 882 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 CUEDC1Q9NWM3 386 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 LYPLA1O75608 230 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 RPS12P25398 132 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 MSX2P35548 267 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 TUFMP49411 452 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 QPCTQ16769 361 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 RBFAQ8N0V3 343 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms