RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SLC6A2P23975 617 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 UBE2E3Q969T4 207 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 SERPINB11Q96P15 392 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 SNRNP25Q9BV90 132 aaKnown RBP9.85□□□□□ -0.83
COL6A3-201ENST00000295550 DHX33Q9H6R0 707 aaKnown RBP9.85□□□□□ -0.83
COL6A3-201ENST00000295550 STOX2Q9P2F5 926 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-201ENST00000295550 OAS3Q9Y6K5 1087 aaKnown RBP9.85□□□□□ -0.83
COL6A3-201ENST00000295550 AP2A2O94973 939 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 LGALS2P05162 132 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 CKBP12277 381 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 GALNTL5Q7Z4T8 443 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 OAFQ86UD1 273 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 RIOX2Q8IUF8 465 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 ZFP14Q9HCL3 533 aa9.85□□□□□ -0.83
COL6A3-201ENST00000295550 FBXO6Q9NRD1 293 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-201ENST00000295550 CCNYL3P0C7X3 344 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF7P17097 686 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 WEE1P30291 646 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TOMM20Q15388 145 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MARC1Q5VT66 337 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RNF220Q5VTB9 566 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CATSPERGQ6ZRH7 1159 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 SLC41A1Q8IVJ1 513 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TRAPPC12Q8WVT3 735 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RBM4BQ9BQ04 359 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RBM4Q9BWF3 364 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 KLQ9UEF7 1012 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 GRIP1Q9Y3R0 1128 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RGS10O43665 173 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 PCDH8O95206 1070 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 OR56A5P0C7T3 313 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 GPAT3Q53EU6 434 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TMPRSS11AQ6ZMR5 421 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 GALNT5Q7Z7M9 940 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 LTA4HP09960 611 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TNFSF9P41273 254 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MTHFRP42898 656 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 AIF1P55008 147 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CDKL1Q00532 357 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ZC3H3Q8IXZ2 948 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TTC29Q8NA56 475 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CUEDC1Q9NWM3 386 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 FFAR3O14843 346 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 GPR42O15529 346 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 UGT2B17O75795 530 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 NTRK1P04629 796 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 PGRP06401 933 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TM4SF1P30408 202 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CYP2C18P33260 490 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CDH8P55286 799 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MBTD1Q05BQ5 628 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 PSTKQ8IV42 348 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 DEFB106AQ8N104 65 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CST11Q9H112 138 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ABCB9Q9NP78 766 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ZNHIT3Q15649 155 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 PCID2Q5JVF3 399 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 BSNDQ8WZ55 320 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF607Q96SK3 696 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 OSMRQ99650 979 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 CSDE1O75534 798 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 IFNA7P01567 189 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MNDAP41218 407 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ACAP2Q15057 778 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RASAL3Q86YV0 1011 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 AVILO75366 819 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 HOXB6P17509 224 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MPP2Q14168 576 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 TAF1CQ15572 869 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 MAPKAPK3Q16644 382 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 LIPMQ5VYY2 423 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 INO80EQ8NBZ0 244 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 OR5B17Q8NGF7 314 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RP9Q8TA86 221 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 QRFPRQ96P65 431 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 SETD4Q9NVD3 440 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 DDX43Q9NXZ2 648 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 RCOR3Q9P2K3 495 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 LIPEQ05469 1076 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 OR4A15Q8NGL6 344 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 DNAJA4Q8WW22 397 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 COL26A1Q96A83 441 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 ELOVL4Q9GZR5 314 aa9.84□□□□□ -0.83
COL6A3-201ENST00000295550 PRPF19Q9UMS4 504 aaKnown RBP9.84□□□□□ -0.83
COL6A3-201ENST00000295550 A8MUI8 341 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 SGTAO43765 313 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 OR7A10O76100 309 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 MLYCDO95822 493 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 UNC5AQ6ZN44 842 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 CD101Q93033 1021 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 FBXO44Q9H4M3 255 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 PCDHGC3Q9UN70 934 aa9.84□□□□□ -0.84
COL6A3-201ENST00000295550 CHST10O43529 356 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 ACSL4O60488 711 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 B4GALT4O60513 344 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 RAMP2O60895 175 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 IFNGP01579 166 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 BPGMP07738 259 aa9.83□□□□□ -0.84
COL6A3-201ENST00000295550 TUBP50607 506 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms