RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 DPYSL2Q16555 572 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 SLC10A6Q3KNW5 377 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 MZT2BQ6NZ67 158 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 C11orf88Q6PI97 169 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 FAM92BQ6ZTR7 304 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 ZNF540Q8NDQ6 660 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 NXNL1Q96CM4 212 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 KLHL1Q9NR64 748 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 ZSCAN32Q9NX65 697 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 PEAK1Q9H792 1746 aa12.76□□□□□ -0.37
PTCD1-201ENST00000292478 C1RP00736 705 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 HIST1H2ABP04908 130 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CLCNKBP51801 687 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 POLR2JP52435 117 aaKnown RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 PRKAG1P54619 331 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CDH13P55290 713 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 LAPTM5Q13571 262 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SEMA5AQ13591 1074 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 IRAK1BP1Q5VVH5 260 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ANKRD22Q5VYY1 191 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SCIMPQ6UWF3 145 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 HIST3H2AQ7L7L0 130 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ARMC8Q8IUR7 673 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 HIST1H2ACQ93077 130 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 PCED1BQ96HM7 432 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 FUBP3Q96I24 572 aaKnown RBP eCLIP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 LRTM1Q9HBL6 345 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ATP6AP2A0A1C7CYW4 349 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CACNB4O00305 520 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SLC7A4O43246 635 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SIN3BO75182 1162 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ATP6AP2O75787 350 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CLK3P49761 638 aaKnown RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 GPAT3Q53EU6 434 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CPTPQ5TA50 214 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SPRYD7Q5W111 196 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 UPF1Q92900 1129 aaKnown RBP eCLIP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 NPAS2Q99743 824 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 HIPK3Q9H422 1215 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 PLGRKTQ9HBL7 147 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 AKAP7Q9P0M2 348 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 RAB26Q9ULW5 256 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 UROSP10746 265 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 AMD1P17707 334 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 LCP2Q13094 533 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ALG11Q2TAA5 492 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 TAC4Q86UU9 113 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 POMGNT2Q8NAT1 580 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 GSTCDQ8NEC7 633 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 OR4A15Q8NGL6 344 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 OR2T34Q8NGX1 318 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 OR2T3Q8NH03 318 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 POLR1BQ9H9Y6 1135 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ASF1AQ9Y294 204 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 AK5Q9Y6K8 562 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 AP3D1O14617 1153 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 VNN1O95497 513 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 NUDT14O95848 222 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 STAT5AP42229 794 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ARMC3Q5W041 872 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 TWIST2Q8WVJ9 160 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ROPN1LQ96C74 230 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 FNDC11Q9BVV2 318 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 NUSAP1Q9BXS6 441 aaKnown RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 C3orf14Q9HBI5 128 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SEMA3GQ9NS98 782 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 FNIP2Q9P278 1114 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CDH22Q9UJ99 828 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ARL5CA6NH57 179 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 G3V2T6 193 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 FAM155BO75949 473 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 OR6B1O95007 311 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 RFTN1Q14699 578 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CBX2Q14781 532 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ZIK1Q3SY52 487 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 C17orf64Q86WR6 236 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 CFAP52Q8N1V2 620 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 FERD3LQ96RJ6 166 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 HAPLN3Q96S86 360 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 SMAD5Q99717 465 aaKnown RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ZNF490Q9ULM2 529 aaPredicted RBP12.75□□□□□ -0.37
PTCD1-201ENST00000292478 ZNF780BQ9Y6R6 833 aa12.75□□□□□ -0.37
PTCD1-201ENST00000292478 TRIM43BA6NCK2 446 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 STK16O75716 305 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 IL6P05231 212 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 CD48P09326 243 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 SPIBQ01892 262 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 BIKQ13323 160 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 TIGD2Q4W5G0 525 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 SH3D19Q5HYK7 790 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 DSELQ8IZU8 1212 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 BANPQ8N9N5 519 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 GPR156Q8NFN8 814 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 AIF1LQ9BQI0 150 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 INTS10Q9NVR2 710 aaKnown RBP12.74□□□□□ -0.37
PTCD1-201ENST00000292478 ZNF214Q9UL59 606 aaPredicted RBP12.74□□□□□ -0.37
PTCD1-201ENST00000292478 DMTF1Q9Y222 760 aa12.74□□□□□ -0.37
PTCD1-201ENST00000292478 INSIG1O15503 277 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms