RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IKZF3Q9UKT9 509 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 FIS1Q9Y3D6 152 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 SULT2A1Q06520 285 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 RAD51Q06609 339 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 ATAT1Q5SQI0 421 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 GPR150Q8NGU9 434 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 PPP2R3CQ969Q6 453 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 GRAMD1AQ96CP6 724 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 SORT1Q99523 831 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 AARSD1Q9BTE6 412 aaKnown RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 MYLK2Q9H1R3 596 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 HEY2Q9UBP5 337 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 CDH7Q9ULB5 785 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 MYO15AQ9UKN7 3530 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 CAPN8A6NHC0 703 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 SOCS5O75159 536 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 SNNO75324 88 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 MTX2O75431 263 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 GSTA1P08263 222 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 IGFBP4P22692 258 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 SERPINB3P29508 390 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 GDI1P31150 447 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ARFIP2P53365 341 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 FNDC3BQ53EP0 1204 aaKnown RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 SERPINA9Q86WD7 417 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 CRLF3Q8IUI8 442 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ZNF781Q8N8C0 355 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 SCRN2Q96FV2 425 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 THAP1Q9NVV9 213 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 HACD3Q9P035 362 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 NUP210Q8TEM1 1887 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 TRIM13O60858 407 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 SERPINE1P05121 402 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ATP5BP06576 529 aaKnown RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 HNRNPLP14866 589 aaKnown RBP eCLIP16.41■□□□□ 0.22
USP4-201ENST00000265560 FAM83EQ2M2I3 478 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 TYSND1Q2T9J0 566 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 CTSL3PQ5NE16 218 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ETFBKMTQ8IXQ9 262 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 STK40Q8N2I9 435 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 PEX13Q92968 403 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 PBXIP1Q96AQ6 731 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 HEPHQ9BQS7 1158 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 LMAN2LQ9H0V9 348 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 OXSMQ9NWU1 459 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ARMCX1Q9P291 453 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 MBD1Q9UIS9 605 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 FBXO10Q9UK96 956 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ANKRD6Q9Y2G4 727 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 PRSS21Q9Y6M0 314 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 LRRC14BA6NHZ5 514 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 NCF1BA6NI72 391 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 NCF1CA8MVU1 366 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 NFATC1O95644 943 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 LTA4HP09960 611 aaKnown RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 NCF1P14598 390 aaPredicted RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 FDXRP22570 491 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 CSNK1DP48730 415 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 ISG20Q96AZ6 181 aaKnown RBP16.41■□□□□ 0.22
USP4-201ENST00000265560 UBXN10Q96LJ8 280 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 POMKQ9H5K3 350 aa16.41■□□□□ 0.22
USP4-201ENST00000265560 TARM1B6A8C7 271 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 KLF11O14901 512 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 HSPA4LO95757 839 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 OGNP20774 298 aaKnown RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 MAPK8P45983 427 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 FAM45BPQ6NSW5 357 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 FAM45AQ8TCE6 357 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 PPP4R1Q8TF05 950 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 CACNA2D2Q9NY47 1150 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 UTP6Q9NYH9 597 aaKnown RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 GDE1Q9NZC3 331 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 FAM8A1Q9UBU6 413 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 GLYATL1P3A0A0U1RQE8 302 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 H3BQ06 376 aaPredicted RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 ABCE1P61221 599 aaKnown RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 ST8SIA6P61647 398 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 GRIN2CQ14957 1233 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 DBN1Q16643 649 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 RALGPS1Q5JS13 557 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 ZNF648Q5T619 568 aaPredicted RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 DET1Q7L5Y6 550 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 KIAA0907Q7Z7F0 614 aaPredicted RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 ISCA2Q86U28 154 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 YAF2Q8IY57 180 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 GIMAP7Q8NHV1 300 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 ECHDC3Q96DC8 303 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 LRRC37BQ96QE4 947 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 MRPL46Q9H2W6 279 aaKnown RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.4■□□□□ 0.22
USP4-201ENST00000265560 USH1CQ9Y6N9 552 aa16.4■□□□□ 0.22
USP4-201ENST00000265560 TMEM233B4DJY2 109 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ZNF37AP17032 561 aaPredicted RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 MPSTP25325 297 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 GJA4P35212 333 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ZBTB16Q05516 673 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 NFATC2Q13469 925 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 OR4D1Q15615 310 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CES5AQ6NT32 575 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ZYG11AQ6WRX3 759 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms