RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DICER1Q9UPY3 1922 aaKnown RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 LINC00854A0A1B0GVQ3 168 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TRIM64CA6NLI5 447 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 NPHS1O60500 1241 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 SEC14L2O76054 403 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 CNTN5O94779 1100 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 IGFBP6P24592 240 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 MAP3K7CLP57077 242 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 PTPRCAPQ14761 206 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 FAM214AQ32MH5 1076 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 XRRA1Q6P2D8 792 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 SPESP1Q6UW49 350 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 ANKRD13BQ86YJ7 626 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 DACH2Q96NX9 599 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 ACOX2Q99424 681 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 FEM1AQ9BSK4 669 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 MED10Q9BTT4 135 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TBCDQ9BTW9 1192 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 VTA1Q9NP79 307 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 MYOZ2Q9NPC6 264 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 ACTR3BQ9P1U1 418 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 COL2A1P02458 1487 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 HTR1AP08908 422 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 FMO3P31513 532 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 GMPSP49915 693 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 ARSFP54793 590 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 BACE1P56817 501 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 NRG1Q02297 640 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 INCA1Q0VD86 236 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 BST2Q10589 180 aaKnown RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 CTU2Q2VPK5 515 aaKnown RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 SLC25A52Q3SY17 297 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 PKDCCQ504Y2 493 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 ATAD3BQ5T9A4 648 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TXNDC11Q6PKC3 985 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TAS2R42Q7RTR8 314 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 SIX5Q8N196 739 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TWIST2Q8WVJ9 160 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 CLIP3Q96DZ5 547 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 C2orf40Q9H1Z8 148 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 LRRC4Q9HBW1 653 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TLR9Q9NR96 1032 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 TNFSF13BQ9Y275 285 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 CAB39Q9Y376 341 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 BOLA1Q9Y3E2 137 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 GJA3Q9Y6H8 435 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 MICAL3Q7RTP6 2002 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 EVPLQ92817 2033 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 UBXN8O00124 270 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 HS6ST1O60243 411 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 ABCB7O75027 752 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 PTPRAP18433 802 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 CRHBPP24387 322 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 MTHFRP42898 656 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 UFM1P61960 85 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 GHRHRQ02643 423 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 YWHAHQ04917 246 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 SPATC1Q76KD6 591 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 BNIPLQ7Z465 357 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 SPRED1Q7Z699 444 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 FBXO16Q8IX29 292 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 C8orf59Q8N0T1 100 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 PTGR2Q8N8N7 351 aaPredicted RBP14.32□□□□□ -0.12
SDC1-201ENST00000254351 POC5Q8NA72 575 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 FRS2Q8WU20 508 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 CD320Q9NPF0 282 aa14.32□□□□□ -0.12
SDC1-201ENST00000254351 WDR81Q562E7 1941 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 AQP12BA6NM10 295 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 TSPAN3O60637 253 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 CHEK2O96017 543 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 GTF2E2P29084 291 aaKnown RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 PSMD8P48556 350 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 NEK2P51955 445 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 MAXP61244 160 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 BCL2A1Q16548 175 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 NEPROQ6NW34 567 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 PKN3Q6P5Z2 889 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 DLK2Q6UY11 383 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 THAP5Q7Z6K1 395 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 RBM23Q86U06 439 aaKnown RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 GATAD2AQ86YP4 633 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 AQP12AQ8IXF9 295 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 CENPIQ92674 756 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 ZNF419Q96HQ0 510 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 MYOCQ99972 504 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 GSTO2Q9H4Y5 243 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 SARDHQ9UL12 918 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 SBF1O95248 1867 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 FAM47E-STBD1D6RA91 191 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 TNPO2O14787 897 aaKnown RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 MSI1O43347 362 aaKnown RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 GUCY1B2O75343 617 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 MFN2O95140 757 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 THRBP10828 461 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 IL5RAQ01344 420 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 ADPRMQ3LIE5 342 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 OTUD1Q5VV17 481 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 FKBP1CQ5VVH2 108 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 GLYATQ6IB77 296 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 NAPEPLDQ6IQ20 393 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms