RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MRGPRX2Q96LB1 330 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 FAM210AQ96ND0 272 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 KLHL25Q9H0H3 589 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 EPB41L1Q9H4G0 881 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 RRAGCQ9HB90 399 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 ENTPD7Q9NQZ7 604 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PLK2Q9NYY3 685 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 HACD3Q9P035 362 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 ZNF229Q9UJW7 825 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 NPEPPSL1A6NEC2 478 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 IQCF5A8MTL0 148 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CDC7O00311 574 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SH3BGRLO75368 114 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CHEK2O96017 543 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 F9P00740 461 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GSNP06396 782 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 THP07101 528 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 MAGEA12P43365 314 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 NR6A1Q15406 480 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PSMD5Q16401 504 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 MEP1AQ16819 746 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 UNC50Q53HI1 259 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 TBPL2Q6SJ96 375 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PAQR3Q6TCH7 311 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 FAM126BQ8IXS8 530 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 HMCESQ96FZ2 354 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CENPNQ96H22 339 aaPredicted RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 VAT1Q99536 393 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 HGH1Q9BTY7 390 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CATSPERBQ9H7T0 1116 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 AGO3Q9H9G7 860 aaKnown RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SNX5Q9Y5X3 404 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 RLFQ13129 1914 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 NDUFS3O75489 264 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 MMP3P08254 477 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 MATN1P21941 496 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TXNL4AP83876 142 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 HERC3Q15034 1050 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TGFBIQ15582 683 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 GLYATQ6IB77 296 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TAPT1Q6NXT6 567 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TNIP2Q8NFZ5 429 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 PPTC7Q8NI37 304 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 CCDC126Q96EE4 140 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 NRBF2Q96F24 287 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 GSTO2Q9H4Y5 243 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 RPF2Q9H7B2 306 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 PRDM16Q9HAZ2 1276 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 CNGB3Q9NQW8 809 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 SACM1LQ9NTJ5 587 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 SLC27A5Q9Y2P5 690 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 CORINQ9Y5Q5 1042 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 LINC00854A0A1B0GVQ3 168 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 E5RI56 91 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 GOT2P00505 430 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 COL6A2P12110 1019 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 SLC6A2P23975 617 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 VARSP26640 1264 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 ARCN1P48444 511 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 OR4D2P58180 307 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 IL5RAQ01344 420 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 CREB5Q02930 508 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 OCA2Q04671 838 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 OR4D1Q15615 310 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TIGD5Q53EQ6 642 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 ZNF678Q5SXM1 525 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 PPP4R4Q6NUP7 873 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 LYSMD3Q7Z3D4 306 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 METTL23Q86XA0 190 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 ITFG1Q8TB96 612 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 CALML6Q8TD86 181 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 GFM2Q969S9 779 aaKnown RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 COX4I2Q96KJ9 171 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 RANBP9Q96S59 729 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 NPLQ9BXD5 320 aaPredicted RBP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 MIOSQ9NXC5 875 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.92□□□□□ -0.5
USHBP1-201ENST00000252597 POLG2Q9UHN1 485 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 VPS4AQ9UN37 437 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 TRIM17Q9Y577 477 aa11.92□□□□□ -0.5
USHBP1-201ENST00000252597 SH3PXD2BA1X283 911 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 M0QZ92 97 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 TRIM24O15164 1050 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 CNPP09543 421 aaKnown RBP11.91□□□□□ -0.5
USHBP1-201ENST00000252597 SIM2Q14190 667 aaPredicted RBP11.91□□□□□ -0.5
USHBP1-201ENST00000252597 ZRANB3Q5FWF4 1079 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 DENND5AQ6IQ26 1287 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 BNIPLQ7Z465 357 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 ISCA2Q86U28 154 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 SPATA2LQ8IUW3 424 aaPredicted RBP11.91□□□□□ -0.5
USHBP1-201ENST00000252597 SLC22A9Q8IVM8 553 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 SEPT8Q92599 483 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 SMARCD1Q96GM5 515 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 GLT1D1Q96MS3 346 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 TMLHEQ9NVH6 421 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 TARM1B6A8C7 271 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 OR4F21O95013 312 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 C8BP07358 591 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 CDH3P22223 829 aa11.91□□□□□ -0.5
USHBP1-201ENST00000252597 POLR2IP36954 125 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms