RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 PAAF1Q9BRP4 392 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 NINJ2Q9NZG7 142 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 OR1F1O43749 312 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CCNYL3P0C7X3 344 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CRATP43155 626 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 TMPRSS6Q8IU80 811 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 SGK2Q9HBY8 427 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 KCTD5Q9NXV2 234 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 MAT2BQ9NZL9 334 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 SCML2Q9UQR0 700 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 COQ6Q9Y2Z9 468 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 GLI3P10071 1580 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 C5orf60A6NFR6 353 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 SDC3O75056 442 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CRYMQ14894 314 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 ZNF542PQ5EBM4 170 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 LDB1Q86U70 411 aaPredicted RBP13.7□□□□□ -0.22
SIX4-201ENST00000216513 CDH7Q9ULB5 785 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 NPEPPSL1A6NEC2 478 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CXCL12P48061 93 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 PCYT1AP49585 367 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CLCN5P51795 746 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 C1orf61Q13536 156 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 CYLC2Q14093 348 aaPredicted RBP13.7□□□□□ -0.22
SIX4-201ENST00000216513 TEX44Q53QW1 395 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 SMG8Q8ND04 991 aaKnown RBP13.7□□□□□ -0.22
SIX4-201ENST00000216513 RPLP0P6Q8NHW5 317 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 LMAN2LQ9H0V9 348 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 ST6GALNAC4Q9H4F1 302 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 NEUROD4Q9HD90 331 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 EQTNQ9NQ60 294 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 ZNF232Q9UNY5 417 aa13.7□□□□□ -0.22
SIX4-201ENST00000216513 RNF225M0QZC1 329 aaPredicted RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 TPP1O14773 563 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 COCHO43405 550 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 L1CAMP32004 1257 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 NUP107P57740 925 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 TMEM126BQ8IUX1 230 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ZNF563Q8TA94 476 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SMPDL3BQ92485 455 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 C8orf48Q96LL4 319 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MECRQ9BV79 373 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ATG10Q9H0Y0 220 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SLC9A8Q9Y2E8 581 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 BTAF1O14981 1849 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MYO9BQ13459 2157 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 DDX3YO15523 660 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 ARHGEF9O43307 516 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SLC35G6P0C7Q6 338 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 TFEBP19484 476 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ARCN1P48444 511 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 PGDP52209 483 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 IL10RBQ08334 325 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ILF2Q12905 390 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 ATP13A5Q4VNC0 1218 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 CERS2Q96G23 380 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SERPINB12Q96P63 405 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 TMEM98Q9Y2Y6 226 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ALPIP09923 528 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 S100A3P33764 101 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MRPS15P82914 257 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 SLC13A2Q13183 592 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 NAE1Q13564 534 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 FBXL22Q6P050 247 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SERPINA9Q86WD7 417 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ANKRD49Q8WVL7 239 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 ZMAT2Q96NC0 199 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 WBP1LQ9NX94 342 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 COPS7AQ9UBW8 275 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 BTRCQ9Y297 605 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 hCG_1818297A0A087WSY0 165 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 C2orf78A6NCI8 922 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 A8MUA0 341 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MUSKO15146 869 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 RPL10P27635 214 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 GRIA2P42262 883 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 NEK2P51955 445 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 KIAA2013Q8IYS2 634 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 PCDH20Q8N6Y1 951 aaKnown RBP13.69□□□□□ -0.22
SIX4-201ENST00000216513 KLHL25Q9H0H3 589 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 CAB39LQ9H9S4 337 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 A8MUI8 341 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 UBDO15205 165 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 CHADO15335 359 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 TBC1D25Q3MII6 688 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 KBTBD12Q3ZCT8 623 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MR1Q95460 341 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 TLR10Q9BXR5 811 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 PDLIM7Q9NR12 457 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 MIOSQ9NXC5 875 aa13.69□□□□□ -0.22
SIX4-201ENST00000216513 SHPRHQ149N8 1683 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 PRMT5O14744 637 aaPredicted RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 MTX2O75431 263 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 FAM155BO75949 473 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 PSMA3P25788 255 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 VARSP26640 1264 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 SERPINB3P29508 390 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 STX5Q13190 355 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 LDLRAP1Q5SW96 308 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 TTC33Q6PID6 262 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms