RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 STK16O75716 305 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 TM4SF1P30408 202 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GLUD2P49448 558 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 TRIM32Q13049 653 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GPR107Q5VW38 600 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 OR4A15Q8NGL6 344 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CPT1BQ92523 772 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 TSSK3Q96PN8 268 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 NPAS2Q99743 824 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 TMEM109Q9BVC6 243 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 LRTM1Q9HBL6 345 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 ARL8BQ9NVJ2 186 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 SH3GLB1Q9Y371 365 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 PCDHAC2Q9Y5I4 1007 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GSAPA4D1B5 854 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 TAF4O00268 1085 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 C1RP00736 705 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 MPSTP25325 297 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 FAM110CQ1W6H9 321 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 RBM44Q6ZP01 1051 aaKnown RBP13.52□□□□□ -0.24
SF3A1-201ENST00000215793 FAM92BQ6ZTR7 304 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 PTCHD4Q6ZW05 846 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 SLC24A5Q71RS6 500 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 NARS2Q96I59 477 aaKnown RBP13.52□□□□□ -0.24
SF3A1-201ENST00000215793 NMUR2Q9GZQ4 415 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 MFSD1Q9H3U5 465 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 OGDHLQ9ULD0 1010 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 CORO1CQ9ULV4 474 aaPredicted RBP13.52□□□□□ -0.24
SF3A1-201ENST00000215793 SPATA31D1Q6ZQQ2 1576 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 ABLIM1O14639 778 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 PGRMC2O15173 223 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 MFSD11O43934 449 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 SRFBP1Q8NEF9 429 aaKnown RBP13.52□□□□□ -0.24
SF3A1-201ENST00000215793 PSMA8Q8TAA3 256 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 PHPT1Q9NRX4 125 aaPredicted RBP13.52□□□□□ -0.24
SF3A1-201ENST00000215793 FADS3Q9Y5Q0 445 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 IRAK3Q9Y616 596 aa13.52□□□□□ -0.24
SF3A1-201ENST00000215793 RNF225M0QZC1 329 aaPredicted RBP13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CXCL14O95715 111 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 DNTTP04053 509 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CYP3A5P20815 502 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CCR3P51677 355 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 ROR2Q01974 943 aaKnown RBP13.52□□□□□ -0.25
SF3A1-201ENST00000215793 MED22Q15528 200 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 TCEAL5Q5H9L2 206 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 ADGRD1Q6QNK2 874 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 FAM47BQ8NA70 645 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 ERLEC1Q96DZ1 483 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 GBA3Q9H227 469 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 PIGUQ9H490 435 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 SGK2Q9HBY8 427 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.52□□□□□ -0.25
SF3A1-201ENST00000215793 RAB23Q9ULC3 237 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 UGT2B11O75310 529 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 TM7SF2O76062 418 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 TGFBR2P37173 567 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CYP4F2P78329 520 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CYP4F3Q08477 520 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 SAPCD2Q86UD0 394 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CNTD1Q8N815 330 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 APOLD1Q96LR9 279 aa13.52□□□□□ -0.25
SF3A1-201ENST00000215793 ZNF490Q9ULM2 529 aaPredicted RBP13.52□□□□□ -0.25
SF3A1-201ENST00000215793 CCDC162PA2VCL2 907 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 H3BM21 787 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 WNT7AO00755 349 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 MSI1O43347 362 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ATG13O75143 517 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CDK14O94921 469 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 MMP3P08254 477 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LAG3P18627 525 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 IGFBP4P22692 258 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 L1CAMP32004 1257 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LIMK2P53671 638 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 PYDC2Q56P42 97 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LBX2Q6XYB7 198 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DGCR14Q96DF8 476 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 COX4I2Q96KJ9 171 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ACAT2Q9BWD1 397 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 SSU72Q9NP77 194 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 PNPLA8Q9NP80 782 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DNAJC28Q9NX36 388 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 MCM8Q9UJA3 840 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 RAI2Q9Y5P3 530 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 KIDINS220Q9ULH0 1771 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ADSLP30566 484 aaPredicted RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 TAS2R41P59536 307 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ELP6Q0PNE2 266 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 RIPK1Q13546 671 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ZNF846Q147U1 533 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CRY2Q49AN0 593 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 PERM1Q5SV97 790 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 GLYATQ6IB77 296 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 RHBDF2Q6PJF5 856 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CFAP52Q8N1V2 620 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 SLC25A51Q9H1U9 297 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 TMEM138Q9NPI0 162 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 MRTO4Q9UKD2 239 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 FAM86C2PA6NEL3 165 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 UGT2B17O75795 530 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 IL12AP29459 219 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms