RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ASTN2O75129 1339 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CNTNAP1P78357 1384 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SCGNO76038 276 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CACNA2D1P54289 1103 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 RGS8P57771 180 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 KCNJ2P63252 427 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CDK16Q00536 496 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PARP6Q2NL67 630 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DCST1Q5T197 706 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ARHGAP40Q5TG30 622 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ARID3BQ8IVW6 561 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 OXR1Q8N573 874 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PIK3C3Q8NEB9 887 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 KCNV2Q8TDN2 545 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TEKT5Q96M29 485 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 THAP2Q9H0W7 228 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 GPATCH2LQ9NWQ4 482 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DIP2CQ9Y2E4 1556 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ERBB2P04626 1255 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ACRP10323 421 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BMP4P12644 408 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ASMTP46597 345 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ALDH3A2P51648 485 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 IL18R1Q13478 541 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SPANXN2Q5MJ10 180 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DACT2Q5SW24 774 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF730Q6ZMV8 503 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 LYSMD3Q7Z3D4 306 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MTDHQ86UE4 582 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ZDHHC13Q8IUH4 622 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 Q8N9G6 341 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 OR4K17Q8NGC6 315 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TRPM4Q8TD43 1214 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SLC5A5Q92911 643 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM121BQ9BXQ6 578 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PCDHB1Q9Y5F3 818 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PPLO60437 1756 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM120BA0PK00 339 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 FOXN3O00409 490 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SCAMP3O14828 347 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MGAT1P26572 445 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SPAM1P38567 509 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MTM1Q13496 603 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PTPRNQ16849 979 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TSGA10IPQ3SY00 556 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 EIPR1Q53HC9 387 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TPGS2Q68CL5 300 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 APTXQ7Z2E3 356 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PNLDC1Q8NA58 520 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SIPA1Q96FS4 1042 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SEMA3CQ99985 751 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MRIQ9BWK5 157 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PCDH9Q9HC56 1237 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CMTM6Q9NX76 183 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 KLRF1Q9NZS2 232 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SNX13Q9Y5W8 968 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 REREQ9P2R6 1566 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 FAM221BA6H8Z2 402 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MED26O95402 600 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 GJA1P17302 382 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 HOXB6P17509 224 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DNAJA1P31689 397 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 GALK2Q01415 458 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 HSDL1Q3SXM5 330 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 FNBP1LQ5T0N5 605 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BNIPLQ7Z465 357 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 LHX5Q9H2C1 402 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PDE7BQ9NP56 450 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 GLYATL1P3A0A0U1RQE8 302 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BTBD19C9JJ37 291 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 F8VP50 259 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TMX2-CTNND1H3BSU7 103 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SCDO00767 359 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TRIM3O75382 744 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PGLSO95336 258 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BPNT1O95861 308 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 LAMP2P13473 410 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PKMP14618 531 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 AMPD1P23109 780 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CLCN5P51795 746 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF41P51814 821 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF132P52740 706 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PNLIPRP1P54315 467 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SCRN3Q0VDG4 424 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 FGL2Q14314 439 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SHC4Q6S5L8 630 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 UBE2R2Q712K3 238 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PARP9Q8IXQ6 854 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 KIAA0319LQ8IZA0 1049 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 FSTL5Q8N475 847 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PSMA8Q8TAA3 256 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 LMX1AQ8TE12 382 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 KBTBD7Q8WVZ9 684 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 RASSF5Q8WWW0 418 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 NARS2Q96I59 477 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TCF7L2Q9NQB0 619 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 NUDT5Q9UKK9 219 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM265A0A087WTH1 108 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 FAM227AF5H4B4 570 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 LIN7AO14910 233 aaPredicted RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms