RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SLC29A1Q99808 456 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 TUBB1Q9H4B7 451 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MID1IP1Q9NPA3 183 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CATSPERZQ9NTU4 200 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CCM2LQ9NUG4 571 aaPredicted RBP12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MARCH2Q9P0N8 246 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MIA3Q5JRA6 1907 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 FXYD1O00168 92 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 PPP6CO00743 305 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 NME4O00746 187 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 VPS4BO75351 444 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 GJB3O75712 270 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SIX3O95343 332 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 STAMBPO95630 424 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ATP6V1B1P15313 513 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 CAPN3P20807 821 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ACVRL1P37023 503 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 FOXM1Q08050 763 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 MFSD14CQ5VZR4 134 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 CST9Q5W186 159 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 PACRGLQ8N7B6 248 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 OR13C4Q8NGS5 318 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 BLOC1S5Q8TDH9 187 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 TSPEARQ8WU66 669 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 RPRD1AQ96P16 312 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SLC39A3Q9BRY0 314 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ANKRD60Q9BZ19 345 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 TRIM15Q9C019 465 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 DERL2Q9GZP9 239 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SLC52A3Q9NQ40 469 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 MYOCOSA0A1B0GUC4 107 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 LRRC14BA6NHZ5 514 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF839A8K0R7 811 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SYN3O14994 580 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SEPT4O43236 478 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 HTRA2O43464 458 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 NDST3O95803 873 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 EOMESO95936 686 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ASGR1P07306 291 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 LBPP18428 481 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF140P52738 457 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 FOXA1P55317 472 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 BNIP2Q12982 314 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 LCP2Q13094 533 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 MTA1Q13330 715 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 GRB7Q14451 532 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF235Q14590 738 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 PTPRCAPQ14761 206 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 PFKFB4Q16877 469 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 KIF19Q2TAC6 998 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 MAP7D1Q3KQU3 841 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 C5orf22Q49AR2 442 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 NHSL2Q5HYW2 709 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 OGFOD2Q6N063 350 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ISLR2Q6UXK2 745 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 AMIGO2Q86SJ2 522 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 CIR1Q86X95 450 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 SLC15A3Q8IY34 581 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 CANT1Q8WVQ1 401 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 FBXO32Q969P5 355 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 MPP4Q96JB8 637 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 NSUN5Q96P11 429 aaKnown RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 HAUS8Q9BT25 410 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 NOL11Q9H8H0 719 aaKnown RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 GMPR2Q9P2T1 348 aaKnown RBP12.73□□□□□ -0.37
LINC00540-203ENST00000631321 AK5Q9Y6K8 562 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 TTC3P53804 2025 aa12.73□□□□□ -0.37
LINC00540-203ENST00000631321 ARHGAP10A1A4S6 786 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 LCHNA4D1U4 455 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 NR5A2O00482 541 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CLASP2O75122 1294 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 H6PDO95479 791 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SPATA31D3P0C874 917 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PRR35P0CG20 571 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF23P17027 643 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 OR1E1P30953 314 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 HUNKP57058 714 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 NAA20P61599 178 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PRKCQQ04759 706 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 MRPL58Q14197 206 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SETMARQ53H47 684 aaPredicted RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CLLU1OSQ5K130 101 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 VARS2Q5ST30 1063 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 NADSYN1Q6IA69 706 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CCSAPQ6IQ19 270 aaPredicted RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 LCN8Q6JVE9 175 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SPATA31D4Q6ZUB0 917 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 RTN4RL1Q86UN2 441 aaPredicted RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 IFNL1Q8IU54 200 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 RYBPQ8N488 228 aaPredicted RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 KLHDC9Q8NEP7 349 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TSPAN14Q8NG11 270 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 STAG3L4Q8TBR4 150 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TRIB2Q92519 343 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 EXT2Q93063 718 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 MYEOVQ96EZ4 313 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CDKN2AIPNLQ96HQ2 116 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TCF12Q99081 682 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms