RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NYAP1Q6ZVC0 841 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 GLIS1Q8NBF1 620 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 GRK7Q8WTQ7 553 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 ADAMTS14Q8WXS8 1223 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 CDC6Q99741 560 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 TRABDQ9H4I3 376 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 ETNK1Q9HBU6 452 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 HACD3Q9P035 362 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 PCOLCE2Q9UKZ9 415 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 SPO11Q9Y5K1 396 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 CFAP47Q6ZTR5 3102 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 KNL1Q8NG31 2342 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 ERI2A8K979 691 aaKnown RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 FLRT2O43155 660 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 GAS8O95995 478 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 RPL22P35268 128 aaKnown RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 ADRA1AP35348 466 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 VPS41P49754 854 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 PDE1CQ14123 709 aaPredicted RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 PTK2BQ14289 1009 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 INPP5AQ14642 412 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 TRIP13Q15645 432 aaPredicted RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 ESRP1Q6NXG1 681 aaKnown RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 PPP1R21Q6ZMI0 780 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 KDM7AQ6ZMT4 941 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 GLRX5Q86SX6 157 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 DCP2Q8IU60 420 aaKnown RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 CREG2Q8IUH2 290 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 SLC22A18ASQ8N1D0 253 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 OXR1Q8N573 874 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 AP2M1Q96CW1 435 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 WDR26Q9H7D7 661 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 IL21RQ9HBE5 538 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 RNF14Q9UBS8 474 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 FEZ2Q9UHY8 353 aaPredicted RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 FNDC3AQ9Y2H6 1198 aaKnown RBP18.04■□□□□ 0.48
CLN3-239ENST00000628023 OR1A2Q9Y585 309 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 FAM208BQ5VWN6 2430 aa18.04■□□□□ 0.48
CLN3-239ENST00000628023 SRRM3A6NNA2 597 aaPredicted RBP18.03■□□□□ 0.48
CLN3-239ENST00000628023 TOR1BO14657 336 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 ECEL1O95672 775 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 KRT14P02533 472 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 APRTP07741 180 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 TSHRP16473 764 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 HTR1BP28222 390 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 GPR1P46091 355 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 ARRB1P49407 418 aaPredicted RBP18.03■□□□□ 0.48
CLN3-239ENST00000628023 CCT8P50990 548 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 PFN3P60673 137 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 YPEL5P62699 121 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 SEMA5AQ13591 1074 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 CDKN3Q16667 212 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 KCTD11Q693B1 232 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 RANBP10Q6VN20 620 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 RFLNAQ6ZTI6 216 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 TECPR1Q7Z6L1 1165 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 LINC00523Q86TU6 105 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 SPATS2Q86XZ4 545 aaKnown RBP18.03■□□□□ 0.48
CLN3-239ENST00000628023 KLHDC8BQ8IXV7 354 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 NRSN1Q8IZ57 195 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 PNPLA1Q8N8W4 532 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 PLA2G15Q8NCC3 412 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 RHBDD1Q8TEB9 315 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 RAD18Q9NS91 495 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.03■□□□□ 0.48
CLN3-239ENST00000628023 AKAP13Q12802 2813 aa18.03■□□□□ 0.48
CLN3-239ENST00000628023 RGSL1A5PLK6 1076 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 CACNB4O00305 520 aaPredicted RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 DFNA5O60443 496 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 CBFA2T3O75081 653 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 SPINT3P49223 89 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 TERF1P54274 439 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 IL9RQ01113 521 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 GPS1Q13098 491 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 PPP1R7Q15435 360 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 PRAMEF14Q5SWL7 426 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 ALS2CLQ60I27 953 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 PNCKQ6P2M8 343 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 ZNF765Q7L2R6 523 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 TMC3Q7Z5M5 1100 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 PARGQ86W56 976 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 KLHL7Q8IXQ5 586 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 RAVER1Q8IY67 606 aaKnown RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 CBARPQ8N350 705 aaPredicted RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 DNAAF3Q8N9W5 541 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 ZNF592Q92610 1267 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 SCAMP4Q969E2 229 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 ELF4Q99607 663 aaPredicted RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 APOOQ9BUR5 198 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 RIOK2Q9BVS4 552 aaKnown RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 DDX47Q9H0S4 455 aaKnown RBP18.02■□□□□ 0.48
CLN3-239ENST00000628023 ABCG8Q9H221 673 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 ERVMER34-1Q9H9K5 563 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 PKP3Q9Y446 797 aa18.02■□□□□ 0.48
CLN3-239ENST00000628023 TP53BP1Q12888 1972 aaPredicted RBP18.02■□□□□ 0.47
CLN3-239ENST00000628023 CABIN1Q9Y6J0 2220 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 K7ESM1 405 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 AURKAO14965 403 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 PYGLP06737 847 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 DPTQ07507 201 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms