RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CRTAMO95727 393 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 CSF2RAP15509 400 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 FDXRP22570 491 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 CSKP41240 450 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 DPP6P42658 865 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 KPNA2P52292 529 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZNF140P52738 457 aaPredicted RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 SH3BP2P78314 561 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ECT2LQ008S8 904 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 TNK2Q07912 1038 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 VEPH1Q14D04 833 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 PTPRNQ16849 979 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 CAMK1DQ8IU85 385 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 APCDD1Q8J025 514 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 PCDH20Q8N6Y1 951 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 PLD4Q96BZ4 506 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZNF333Q96JL9 665 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZFRQ96KR1 1074 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 CDK5RAP1Q96SZ6 601 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 GPR21Q99679 349 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 COMMD8Q9NX08 183 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 UTP6Q9NYH9 597 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 TRAF6Q9Y4K3 522 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 CHD9Q3L8U1 2897 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ANAPC1Q9H1A4 1944 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 TEX28O15482 410 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 F11P03951 625 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 THRAP10827 490 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 GFAPP14136 432 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 MC4RP32245 332 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 MNX1P50219 401 aaPredicted RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 DNAJB13P59910 316 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ACVR1Q04771 509 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 TSNQ15631 228 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 SLC14A2Q15849 920 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 SETMARQ53H47 684 aaPredicted RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 UNC50Q53HI1 259 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZNF678Q5SXM1 525 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 PGM2L1Q6PCE3 622 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 LAYNQ6UX15 382 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 OTOP2Q7RTS6 562 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 FBXW8Q8N3Y1 598 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 SIDT2Q8NBJ9 832 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 ADAMTS19Q8TE59 1207 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 TOP1MTQ969P6 601 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 RPL10LQ96L21 214 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZNF558Q96NG5 402 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZNF599Q96NL3 588 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 FEM1AQ9BSK4 669 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 RTKNQ9BST9 563 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ZBTB26Q9HCK0 441 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 VTI1BQ9UEU0 232 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 OGDHLQ9ULD0 1010 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 C2orf81A6NN90 581 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 F8W8V4 182 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 WISP3O95389 354 aaPredicted RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 MTHFD2P13995 350 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 IMPDH1P20839 514 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 AP2B1P63010 937 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 DSG1Q02413 1049 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CDH18Q13634 790 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 LPCAT4Q643R3 524 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CYHR1Q6ZMK1 362 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 TAS2R42Q7RTR8 314 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SLC39A11Q8N1S5 342 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 KYQ8NBH2 561 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CEP70Q8NHQ1 597 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 TRPC4APQ8TEL6 797 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 DDI1Q8WTU0 396 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 UCMAQ8WVF2 138 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 EID2BQ96D98 161 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 AARSD1Q9BTE6 412 aaKnown RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 SEMA4BQ9NPR2 832 aaPredicted RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 NLE1Q9NVX2 485 aaPredicted RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 TBC1D30Q9Y2I9 924 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SUPT3HB4E1H0 165 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SUPT3HO75486 399 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 URODP06132 367 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CKMP06732 381 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ITGB6P18564 788 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 GABRR2P28476 465 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 THOP1P52888 689 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 RHOAP61586 193 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ALG1LQ6GMV1 187 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 KLHDC10Q6PID8 442 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ANKRD33Q7Z3H0 272 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 HMGCLL1Q8TB92 370 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 MYRFLQ96LU7 910 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CCDC68Q9H2F9 335 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 MID1IP1Q9NPA3 183 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 NDE1Q9NXR1 346 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 VPS51Q9UID3 782 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 INSL5Q9Y5Q6 135 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SLCO1B7G3V0H7 640 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 STX7O15400 261 aaKnown RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 CCNT2O60583 730 aaKnown RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 CHRM3P20309 590 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 CA5AP35218 305 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 AGTR2P50052 363 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 370.3 ms