RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PBKQ96KB5 322 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 NAPGQ99747 312 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ADGRE3Q9BY15 652 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 RAB6BQ9NRW1 208 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 CDV3Q9UKY7 258 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 CNOT6Q9ULM6 557 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 TMEM98Q9Y2Y6 226 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 PTPRBP23467 1997 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 SLC30A4O14863 429 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 MTX2O75431 263 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 TRIM23P36406 574 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 RPL26P61254 145 aaKnown RBP13.44□□□□□ -0.26
LINC00540-202ENST00000616974 PARP6Q2NL67 630 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 ALG11Q2TAA5 492 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 ANKRD22Q5VYY1 191 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 ITPRIPL1Q6GPH6 555 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 DOK6Q6PKX4 331 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 IQCHQ86VS3 1027 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 OR13C4Q8NGS5 318 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 NETO1Q8TDF5 533 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 ACTRT1Q8TDG2 376 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 OR1E3Q8WZA6 343 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 TBL1YQ9BQ87 522 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 TRIM56Q9BRZ2 755 aaKnown RBP13.44□□□□□ -0.26
LINC00540-202ENST00000616974 KCND1Q9NSA2 647 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 RPL26L1Q9UNX3 145 aaKnown RBP13.44□□□□□ -0.26
LINC00540-202ENST00000616974 PRKAB1Q9Y478 270 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 PLEKHM1Q9Y4G2 1056 aa13.44□□□□□ -0.26
LINC00540-202ENST00000616974 FFAR2O15552 330 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 EPHA8P29322 1005 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 GEMP55040 296 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CRADDP78560 199 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 TMPRSS15P98073 1019 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 P3H1Q32P28 736 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 HENMT1Q5T8I9 393 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 DRICH1Q6PGQ1 229 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 ENPP7Q6UWV6 458 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 RABEPKQ7Z6M1 372 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 MAGOHBQ96A72 148 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 ZNF778Q96MU6 729 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 GPR63Q9BZJ6 419 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CLPBQ9H078 707 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 MAGEE1Q9HCI5 957 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 NEU2Q9Y3R4 380 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 SPAARA0A1B0GVQ0 90 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 A0A1W2PQ67 120 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 STK10O94804 968 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CA4P22748 312 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 COILP38432 576 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 DPP6P42658 865 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 RABIFP47224 123 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CLDN6P56747 220 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CDK3Q00526 305 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 POU6F1Q14863 301 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 SMAD1Q15797 465 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 SLC14A2Q15849 920 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CERCAMQ5T4B2 595 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 CCDC137Q6PK04 289 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 GSTA5Q7RTV2 222 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 GPR161Q8N6U8 529 aaKnown RBP13.43□□□□□ -0.26
LINC00540-202ENST00000616974 LRRC61Q9BV99 259 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 APC2O95996 2303 aa13.43□□□□□ -0.26
LINC00540-202ENST00000616974 NBEAQ8NFP9 2946 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ACACAQ13085 2346 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 TRIM38O00635 465 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A9O60656 530 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CBFA2T3O75081 653 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ANXA9O76027 345 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 AP2A1O95782 977 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CER1O95813 267 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 TOP3BO95985 862 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 APRTP07741 180 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ZNF30P17039 623 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A6P19224 532 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A1P22309 533 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A4P22310 534 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 DGKAP23743 735 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 STIP1P31948 543 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A3P35503 534 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A5P35504 534 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 NUDT1P36639 197 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 THOP1P52888 689 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 LIMK1P53667 647 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CYP1B1Q16678 543 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PSAPL1Q6NUJ1 521 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 FAM151BQ6UXP7 276 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ZNF534Q76KX8 674 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 MARK2Q7KZI7 788 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 GLT6D1Q7Z4J2 308 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PIP4P1Q86T03 277 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PARGQ86W56 976 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 HID1Q8IV36 788 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CCDC89Q8N998 374 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 SETD7Q8WTS6 366 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 WDR26Q9H7D7 661 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A7Q9HAW7 530 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A10Q9HAW8 530 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 UGT1A8Q9HAW9 530 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 IL26Q9NPH9 171 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 IL17CQ9P0M4 197 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms