RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CAPS2Q9BXY5 557 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PCMTD2Q9NV79 361 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 FAM95CA0A1B0GW59 222 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 IL9P15248 144 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 VIPR1P32241 457 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 TIE1P35590 1138 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 MMP12P39900 470 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 WASP42768 502 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 ETV4P43268 484 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 PGGT1BP53609 377 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 LRRC14Q15048 493 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 ZKSCAN8Q15776 578 aaPredicted RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 FASTKD1Q53R41 847 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 ZNF549Q6P9A3 640 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 DPPA4Q7L190 304 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 OTUD6BQ8N6M0 293 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 GPR26Q8NDV2 337 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 OMDQ99983 421 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 FAM96AQ9H5X1 160 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 MLXIPLQ9NP71 852 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 INTS9Q9NV88 658 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 SLC17A7Q9P2U7 560 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 SLC39A10Q9ULF5 831 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 LOC730098B7Z3J9 87 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 SRP72O76094 671 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 ASMTLO95671 621 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 ZNF30P17039 623 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 TYK2P29597 1187 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 POLD2P49005 469 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 CLCN5P51795 746 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 TFF2Q03403 129 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 FAM151BQ6UXP7 276 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 MMAAQ8IVH4 418 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 SLC41A1Q8IVJ1 513 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 CEP97Q8IW35 865 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 MGARPQ8TDB4 240 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 LPGAT1Q92604 370 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 ERLEC1Q96DZ1 483 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 TCF12Q99081 682 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 GABRG3Q99928 467 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 SLC13A1Q9BZW2 595 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 RSPH9Q9H1X1 276 aaPredicted RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 SLC2A4RGQ9NR83 387 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 INTS10Q9NVR2 710 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 GRID1Q9ULK0 1009 aa14.22□□□□□ -0.13
USP39-220ENST00000613444 FNDC3AQ9Y2H6 1198 aaKnown RBP14.22□□□□□ -0.13
USP39-220ENST00000613444 TRBV5-4A0A0C4DH59 114 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 AGAP14A8MT82 685 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 COPEO14579 308 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 AREL1O15033 823 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 ADAM23O75077 832 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 ZWINTO95229 277 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PRAMEF1O95521 474 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 IL1BP01584 269 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 C2P06681 752 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 CYP2A6P11509 494 aaPredicted RBP14.21□□□□□ -0.13
USP39-220ENST00000613444 GLULP15104 373 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 CRHR1P34998 444 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 SPINT3P49223 89 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PTPN5P54829 565 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 TAS2R39P59534 338 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 TIAL1Q01085 375 aaKnown RBP eCLIP14.21□□□□□ -0.13
USP39-220ENST00000613444 CACNG1Q06432 222 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 HSD11B1LQ7Z5J1 315 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 SDCCAG8Q86SQ7 713 aaPredicted RBP14.21□□□□□ -0.13
USP39-220ENST00000613444 CLEC14AQ86T13 490 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 IL17RCQ8NAC3 791 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 KCNV2Q8TDN2 545 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PBXIP1Q96AQ6 731 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 NDNQ99608 321 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 OLFM1Q99784 485 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 CD248Q9HCU0 757 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PSD3Q9NYI0 1048 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 CRYL1Q9Y2S2 319 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PLLPQ9Y342 182 aa14.21□□□□□ -0.13
USP39-220ENST00000613444 PLK4O00444 970 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 TM9SF1O15321 606 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 DHRS4L1P0CG22 281 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SLC35E2BP0CK96 405 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SRFP11831 508 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 GM2AP17900 193 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 DRD1P21728 446 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SPAM1P38567 509 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 GNGT1P63211 74 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 NFATC2Q13469 925 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 USP10Q14694 798 aaKnown RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 E2F5Q15329 346 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 ZRANB3Q5FWF4 1079 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 HABP4Q5JVS0 413 aaKnown RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 NKIRAS1Q9NYS0 192 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 APPL1Q9UKG1 709 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 ITM2BQ9Y287 266 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 DOCK9Q9BZ29 2069 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 A0A096LPK6 155 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 GLYATL1P3A0A0U1RQE8 302 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 WISP3O95389 354 aaPredicted RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 MPOP05164 745 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 ADRB3P13945 408 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 PMLP29590 882 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms