RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ABCG8Q9H221 673 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 NOD2Q9HC29 1040 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 APMAPQ9HDC9 416 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 PHPT1Q9NRX4 125 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 KCTD5Q9NXV2 234 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 TAB2Q9NYJ8 693 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 TAS2R14Q9NYV8 317 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 MOSPD1Q9UJG1 213 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 CNOT6Q9ULM6 557 aaKnown RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 TMEM98Q9Y2Y6 226 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SPENQ96T58 3664 aaKnown RBP6.09□□□□□ -1.44
VRK3-220ENST00000600259 PRRC2CQ9Y520 2896 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 CREBBPQ92793 2442 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 TRBV23OR9-2A0A075B6M9 112 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 BLACEA4D250 179 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 A6NCN8 305 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 TMEM191CA6NGB0 347 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 NPIPB15A6NHN6 443 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 LRRC10BA6NIK2 292 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 EFCAB7A8K855 629 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 PSMD11O00231 422 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 EEF2KO00418 725 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 MTSS1O43312 755 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 FZD6O60353 706 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 SOCS5O75159 536 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 FURINP09958 794 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 EEF1GP26641 437 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 ACTR1BP42025 376 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 NSFP46459 744 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 RAB15P59190 212 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 TPI1P60174 286 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ACTR1AP61163 376 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 AP1S1P61966 158 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 UBE2HP62256 183 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 GPLD1P80108 840 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 PTSQ03393 145 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 CDC20Q12834 499 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 TRAF2Q12933 501 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 MAMLD1Q13495 774 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 DPYSQ14117 519 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 LBRQ14739 615 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 KRT31Q15323 416 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 DEFB109BQ30KR1 87 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 CT47A1Q5JQC4 288 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 CFAP58Q5T655 872 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ERMARDQ5T6L9 678 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ATP1A1-AS1Q5TC04 95 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 PLEKHA7Q6IQ23 1121 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ACAD10Q6JQN1 1059 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 IYDQ6PHW0 289 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 WDR74Q6RFH5 385 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 ADAMTSL4Q6UY14 1074 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 RFX8Q6ZV50 586 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 IRF2BP2Q7Z5L9 587 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ZNF761Q86XN6 746 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 NLGN4XQ8N0W4 816 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 FAM26EQ8N5C1 309 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 NLGN4YQ8NFZ3 816 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 C9orf43Q8TAL5 461 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 ENOX1Q8TC92 643 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 SLC37A2Q8TED4 501 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 APOBEC4Q8WW27 367 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 SCAMP4Q969E2 229 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 NUS1Q96E22 293 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 ZNF599Q96NL3 588 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 MCEEQ96PE7 176 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 TEFMQ96QE5 360 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 NUDCD1Q96RS6 583 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 WDR24Q96S15 920 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 AGAP2Q99490 1192 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 CTRCQ99895 268 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 AGPAT1Q99943 283 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 SNRNP25Q9BV90 132 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 CINPQ9BW66 212 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 TRIM7Q9C029 511 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 CLSTN2Q9H4D0 955 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 DHX35Q9H5Z1 703 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 SUDS3Q9H7L9 328 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 FAM207AQ9NSI2 230 aaPredicted RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 ETNK2Q9NVF9 386 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 SIDT1Q9NXL6 827 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 KCNK4Q9NYG8 393 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 DONSONQ9NYP3 566 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 CWC15Q9P013 229 aaKnown RBP6.08□□□□□ -1.44
VRK3-220ENST00000600259 PHTF1Q9UMS5 762 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 AP4E1Q9UPM8 1137 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 KCNMB2Q9Y691 235 aa6.08□□□□□ -1.44
VRK3-220ENST00000600259 A0A1W2PQ67 120 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 PRR19A6NJB7 356 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 A8MU76 341 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 EIF3CLB5ME19 914 aaKnown RBP6.07□□□□□ -1.44
VRK3-220ENST00000600259 PES1O00541 588 aaKnown RBP6.07□□□□□ -1.44
VRK3-220ENST00000600259 ZW10O43264 779 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 MAFKO60675 156 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 DNAJC6O75061 913 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 STK17BO94768 372 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 PGLSO95336 258 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 MAP3K6O95382 1288 aa6.07□□□□□ -1.44
VRK3-220ENST00000600259 PRLP01236 227 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms