RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 MX2P20592 715 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CTNNA1P35221 906 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 TRIM23P36406 574 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 ETV5P41161 510 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CDKN2BP42772 138 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 KIAA1024LP59773 190 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 NSUN2Q08J23 767 aaKnown RBP eCLIP12.49□□□□□ -0.41
UPF1-203ENST00000594504 GALNT2Q10471 571 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 LBRQ14739 615 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 TMCO4Q5TGY1 634 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 SLC9A4Q6AI14 798 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 MFSD7Q6UXD7 560 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CCNJLQ8IV13 435 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 RCOR2Q8IZ40 523 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 SYCE1Q8N0S2 351 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 RNF10Q8N5U6 811 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 ATL2Q8NHH9 583 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 PDCD6IPQ8WUM4 868 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 PTCD2Q8WV60 388 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 WBP1Q96G27 269 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 RBM41Q96IZ5 413 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 MAK16Q9BXY0 300 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 SPATS2LQ9NUQ6 558 aaKnown RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 LRIT1Q9P2V4 623 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 PISDQ9UG56 409 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 ITPR1Q14643 2758 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 SCN8AQ9UQD0 1980 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CCDC66A2RUB6 948 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 APOL1O14791 398 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 B4GAT1O43505 415 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 GLB1P16278 677 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 CTNNA2P26232 953 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 GARSP41250 739 aaKnown RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 MARCKSL1P49006 195 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 RENBPP51606 427 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 MAZP56270 477 aaKnown RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 MAXP61244 160 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 POLR2LP62875 67 aaKnown RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 GBE1Q04446 702 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 ZFP36L1Q07352 338 aaKnown RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 HLTFQ14527 1009 aaKnown RBP eCLIP12.48□□□□□ -0.41
UPF1-203ENST00000594504 TAZQ16635 292 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 C14orf28Q4W4Y0 310 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 TFDP3Q5H9I0 405 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 SPOCD1Q6ZMY3 1216 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 ZNF662Q6ZS27 426 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 HSD11B1LQ7Z5J1 315 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 NRROSQ86YC3 692 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 RFX6Q8HWS3 928 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 PLD5Q8N7P1 536 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 EXD1Q8NHP7 514 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 NSMCE1Q8WV22 266 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 KRT35Q92764 455 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 COQ10AQ96MF6 247 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 ZNF830Q96NB3 372 aaPredicted RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 TMEM74Q96NL1 305 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 SMIM14Q96QK8 99 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 CCNL2Q96S94 520 aaPredicted RBP12.48□□□□□ -0.41
UPF1-203ENST00000594504 STRADBQ9C0K7 418 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 SEMA6CQ9H3T2 930 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 DTLQ9NZJ0 730 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 SEPT3Q9UH03 358 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 APPL1Q9UKG1 709 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 AMFRQ9UKV5 643 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 LOXL2Q9Y4K0 774 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 PCDHA3Q9Y5H8 950 aa12.48□□□□□ -0.41
UPF1-203ENST00000594504 SMG1Q96Q15 3661 aaKnown RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 PRSS38A1L453 326 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 TNFRSF10CO14798 259 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PEX11BO96011 259 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 FGF1P05230 155 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 HOXC4P09017 264 aaPredicted RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 JMJD7P0C870 316 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 CR2P20023 1033 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 AK4P27144 223 aaPredicted RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 CCKBRP32239 447 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 HSPA9P38646 679 aaKnown RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 ETV3P41162 512 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 POLD2P49005 469 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 MAPK10P53779 464 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 OR1D5P58170 312 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 COPS2P61201 443 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 B4GALNT1Q00973 533 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 TRAF2Q12933 501 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 ARHGEF7Q14155 803 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 TFDP2Q14188 446 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 ZNF235Q14590 738 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 GSE1Q14687 1217 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 CNGA3Q16281 694 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PPP2R5EQ16537 467 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 LINC00303Q3SY05 128 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 CERCAMQ5T4B2 595 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 TIGD7Q6NT04 549 aaPredicted RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 RFLNAQ6ZTI6 216 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 USP53Q70EK8 1073 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PEX26Q7Z412 305 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 SPRED1Q7Z699 444 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 NT5DC3Q86UY8 548 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 ZFAND4Q86XD8 727 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 CCDC50Q8IVM0 306 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms