RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SLC18A2Q05940 514 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 WASHC5Q12768 1159 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MSLNQ13421 630 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 PDK3Q15120 406 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 SHBQ15464 509 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZNF77Q15935 545 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 UGCGQ16739 394 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ISXQ2M1V0 245 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.19□□□□□ -1.74
LIG3-211ENST00000588713 TEX44Q53QW1 395 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 OGFRL1Q5TC84 451 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 LRRC38Q5VT99 294 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CDCP2Q5VXM1 449 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ATG16L1Q676U5 607 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 C1orf186Q6ZWK4 172 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ANO5Q75V66 913 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MON1BQ7L1V2 547 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ARCQ7LC44 396 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZNF720Q7Z2F6 126 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 C14orf80Q86SX3 495 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 USP37Q86T82 979 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PRUNE1Q86TP1 453 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CDH24Q86UP0 819 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ITIH5Q86UX2 942 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PPIL6Q8IXY8 311 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZBED8Q8IZ13 594 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CHPFQ8IZ52 775 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TTC9BQ8N6N2 239 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZBTB8BQ8NAP8 495 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 SMYD1Q8NB12 490 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ICA1LQ8NDH6 482 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 RBM15BQ8NDT2 890 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 CADM4Q8NFZ8 388 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 FNDC8Q8TC99 324 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TCP10LQ8TDR4 215 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 DCAKDQ8WVC6 231 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PSMG2Q969U7 264 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 DGCR14Q96DF8 476 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 PRR11Q96HE9 360 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 NT5C1BQ96P26 610 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ACOX2Q99424 681 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ELF4Q99607 663 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 SEPT5Q99719 369 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 EIF2AK1Q9BQI3 630 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 HERPUD2Q9BSE4 406 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CCDC106Q9BWC9 280 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MAK16Q9BXY0 300 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 ACE2Q9BYF1 805 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 FRMD8Q9BZ67 464 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 IQCGQ9H095 443 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 BHMT2Q9H2M3 363 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ST6GALNAC4Q9H4F1 302 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 KCNK13Q9HB14 408 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 GOLGA2P5Q9HBQ8 144 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TRPC7Q9HCX4 862 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MRPL47Q9HD33 250 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 PTPRHQ9HD43 1115 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 UBE2TQ9NPD8 197 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 FBXO6Q9NRD1 293 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 METTL5Q9NRN9 209 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 ETNK2Q9NVF9 386 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 DNAJC17Q9NVM6 304 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 SLC7A8Q9UHI5 535 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZNHIT2Q9UHR6 403 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TUBD1Q9UJT1 453 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 DCTN4Q9UJW0 460 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZNF180Q9UJW8 692 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ITGA11Q9UKX5 1188 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PPM1HQ9ULR3 514 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PAIP2BQ9ULR5 123 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 RAB26Q9ULW5 256 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 DRG1Q9Y295 367 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 R3HDM2Q9Y2K5 976 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 SH3GLB1Q9Y371 365 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 COQ4Q9Y3A0 265 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TMED5Q9Y3A6 229 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 HBS1LQ9Y450 684 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 PCDHA10Q9Y5I2 948 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 CCDC168Q8NDH2 2452 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.18□□□□□ -1.74
LIG3-211ENST00000588713 CCDC162PA2VCL2 907 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 ARHGEF35A5YM69 484 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 EFCAB7A8K855 629 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 PRSS44E7EML9 344 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 INO80B-WBP1J3KQ70 363 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 ZNF701M0R085 212 aaPredicted RBP4.18□□□□□ -1.74
LIG3-211ENST00000588713 VILLO15195 856 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 MSH4O15457 936 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 OIP5O43482 229 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 CHMP2AO43633 222 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 DFNA5O60443 496 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 SDC3O75056 442 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 USP1O94782 785 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 VNN2O95498 520 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 CLPTM1O96005 669 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 F11P03951 625 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 KRT1P04264 644 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 CYP17A1P05093 508 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 CKMP06732 381 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms