RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KRTAP10-9P60411 292 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 PDE1BQ01064 536 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 SLC20A2Q08357 652 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 TROAPQ12815 778 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 TBCEQ15813 527 aaPredicted RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 FAM76BQ5HYJ3 339 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 CXorf66Q5JRM2 361 aaPredicted RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 IRAK1BP1Q5VVH5 260 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 CUZD1Q86UP6 607 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 KCNG4Q8TDN1 519 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 CD101Q93033 1021 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 ORAI1Q96D31 301 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 MMABQ96EY8 250 aaPredicted RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 FEM1CQ96JP0 617 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 MTERF1Q99551 399 aaKnown RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 CMKLR1Q99788 373 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 FBRSL1Q9HCM7 1045 aaKnown RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 DONSONQ9NYP3 566 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 ABI3Q9P2A4 366 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 LIMA1Q9UHB6 759 aaKnown RBP6.26□□□□□ -1.41
SS18-214ENST00000580003 POU2F3Q9UKI9 436 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 CGNL1Q0VF96 1302 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 PDS5AQ29RF7 1337 aaKnown RBP6.25□□□□□ -1.41
SS18-214ENST00000580003 ZNF587BE7ETH6 402 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 SPINT2O43291 252 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 TMEM63AO94886 807 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 CCNDBP1O95273 360 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 CLEC3BP05452 202 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 AMD1P17707 334 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 DLX5P56178 289 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 GRIK2Q13002 908 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 SYT16Q17RD7 645 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 GPATCH4Q5T3I0 446 aaKnown RBP6.25□□□□□ -1.41
SS18-214ENST00000580003 DPPA4Q7L190 304 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 SATL1Q86VE3 508 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 ODF3L1Q8IXM7 274 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 RNF113BQ8IZP6 322 aaKnown RBP6.25□□□□□ -1.41
SS18-214ENST00000580003 MAB21L3Q8N8X9 362 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 TMEM116Q8NCL8 245 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 OR2AK2Q8NG84 335 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 RRNAD1Q96FB5 475 aaKnown RBP6.25□□□□□ -1.41
SS18-214ENST00000580003 CDCA5Q96FF9 252 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 C7orf26Q96N11 449 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 ACOX2Q99424 681 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 SCPEP1Q9HB40 452 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 ACSS1Q9NUB1 689 aaPredicted RBP6.25□□□□□ -1.41
SS18-214ENST00000580003 MAU2Q9Y6X3 613 aa6.25□□□□□ -1.41
SS18-214ENST00000580003 DDNO94850 711 aaPredicted RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 CAMTA2O94983 1202 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 IPO7O95373 1038 aaKnown RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 S1PR1P21453 382 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 HOXC9P31274 260 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 USP8P40818 1118 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 F2RL1P55085 397 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 CSTF3Q12996 717 aaKnown RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 ZRSR1Q15695 479 aaKnown RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 C9orf50Q5SZB4 431 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 FRG2Q64ET8 278 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 TRNP1Q6NT89 227 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 ZNF34Q8IZ26 560 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 PCDH20Q8N6Y1 951 aaKnown RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 OR14L1PQ8NHC6 308 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 LNX1Q8TBB1 728 aaPredicted RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 DUSP19Q8WTR2 217 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 DNASE2BQ8WZ79 361 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 IGSF8Q969P0 613 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 INPP4AQ96PE3 977 aaPredicted RBP6.24□□□□□ -1.41
SS18-214ENST00000580003 EPYCQ99645 322 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 POLR3GLQ9BT43 218 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 SPRY4Q9C004 299 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 VPS33BQ9H267 617 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 PADI1Q9ULC6 663 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 KCNE2Q9Y6J6 123 aa6.24□□□□□ -1.41
SS18-214ENST00000580003 EPB41L2O43491 1005 aaKnown RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 SLC25A12O75746 678 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 TBX18O95935 607 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 PBX3P40426 434 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 RGS2P41220 211 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 ZNF132P52740 706 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 RPS3AP61247 264 aaKnown RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 MPP1Q00013 466 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 RELQ04864 619 aaPredicted RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 ACSM2AQ08AH3 577 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 ILF3Q12906 894 aaKnown RBP eCLIP6.23□□□□□ -1.41
SS18-214ENST00000580003 DCST1Q5T197 706 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 C9orf139Q6ZV77 190 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 TDRD7Q8NHU6 1098 aaKnown RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 SLC20A1Q8WUM9 679 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 ABTB1Q969K4 478 aaPredicted RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 TTC14Q96N46 770 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 LRRC4Q9HBW1 653 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 TCF7L2Q9NQB0 619 aa6.23□□□□□ -1.41
SS18-214ENST00000580003 CNOT8Q9UFF9 292 aaKnown RBP6.23□□□□□ -1.41
SS18-214ENST00000580003 B4E171 279 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 KCNA5P22460 613 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 PSMA4P25789 261 aaKnown RBP6.22□□□□□ -1.41
SS18-214ENST00000580003 TSPAN7P41732 249 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 FASLGP48023 281 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 TMTC3Q6ZXV5 915 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 FRMD1Q8N878 549 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms