RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LGALS13Q9UHV8 139 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 FBXO5Q9UKT4 447 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 FADS3Q9Y5Q0 445 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 MUC3AQ02505 3323 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 RNASEH2AO75792 299 aaKnown RBP25.03■■□□□ 1.6
SHMT1-207ENST00000580002 NDUFV2P19404 249 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 C5AR1P21730 350 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 SPINT3P49223 89 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 PDE1BQ01064 536 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 MROH9Q5TGP6 573 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 ZNF449Q6P9G9 518 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 CNSTQ6PJW8 725 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 C2CD4AQ8NCU7 369 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-207ENST00000580002 MCMBPQ9BTE3 642 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 FBXL12Q9NXK8 326 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 NUMA1Q14980 2115 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 ADH1BP00325 375 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 CHRNA6Q15825 494 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 ZRANB3Q5FWF4 1079 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 CILP2Q8IUL8 1156 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 GANCQ8TET4 914 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 PGM2Q96G03 612 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 SRPK1Q96SB4 655 aaKnown RBP25.03■■□□□ 1.6
SHMT1-207ENST00000580002 KLF6Q99612 283 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-207ENST00000580002 ABCG8Q9H221 673 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 CATSPERZQ9NTU4 200 aa25.03■■□□□ 1.6
SHMT1-207ENST00000580002 MTO1Q9Y2Z2 717 aaKnown RBP25.03■■□□□ 1.6
SHMT1-207ENST00000580002 SCN8AQ9UQD0 1980 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 A0A0C4DFX4 3053 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 GOLGA6L10A6NI86 522 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 H7C0S8 307 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 STK25O00506 426 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 S1PR4O95977 384 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 GABRG2P18507 467 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 HADHAP40939 763 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 AFTPHQ6ULP2 937 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 PELI3Q8N2H9 469 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 SIPA1Q96FS4 1042 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 ATP6V1G3Q96LB4 118 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 IKBKGQ9Y6K9 419 aa25.02■■□□□ 1.6
SHMT1-207ENST00000580002 NEMP1O14524 444 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 GMPRP36959 345 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 GP5P40197 560 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 KIAA1324Q6UXG2 1013 aaKnown RBP25.01■■□□□ 1.59
SHMT1-207ENST00000580002 TECPR1Q7Z6L1 1165 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 FAM124AQ86V42 546 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 EXOC3L1Q86VI1 746 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 UBALD2Q8IYN6 164 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 HMGB4Q8WW32 186 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 TLCD1Q96CP7 247 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 SHDQ96IW2 340 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 SERAC1Q96JX3 654 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 CPNE1Q99829 537 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 OMDQ99983 421 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 FAM167BQ9BTA0 163 aa25.01■■□□□ 1.59
SHMT1-207ENST00000580002 TRIM49D1C9J1S8 452 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 SRP72O76094 671 aaKnown RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 PDGFBP01127 241 aaPredicted RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 DNTTP04053 509 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 ELFN1P0C7U0 828 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 MAGOHP61326 146 aaKnown RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 ACOX1Q15067 660 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 FASTKD1Q53R41 847 aaKnown RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 GOLGA6L1Q8N7Z2 621 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 RBBP8Q99708 897 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 ZNF180Q9UJW8 692 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 TMPRSS11EQ9UL52 423 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 MRPS17Q9Y2R5 130 aaKnown RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 GLYATL1P3A0A0U1RQE8 302 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 PRAMEF1O95521 474 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 ZNF30P17039 623 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 SPAM1P38567 509 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 RASA2Q15283 850 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 TMEM52BQ4KMG9 183 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 TAS2R42Q7RTR8 314 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 ZC3HC1Q86WB0 502 aaKnown RBP25■■□□□ 1.59
SHMT1-207ENST00000580002 GPR150Q8NGU9 434 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 COQ10AQ96MF6 247 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 CAB39LQ9H9S4 337 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 EBF1Q9UH73 591 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 CRYL1Q9Y2S2 319 aa25■■□□□ 1.59
SHMT1-207ENST00000580002 PRR23AA6NEV1 266 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 GOLGA8RI6L899 631 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 OR1I1O60431 355 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 ITGA2BP08514 1039 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 C6P13671 934 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 KRT15P19012 456 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 NAB1Q13506 487 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 HSF5Q4G112 596 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-207ENST00000580002 GRTP1Q5TC63 336 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 AGBL2Q5U5Z8 902 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 RIOK2Q9BVS4 552 aaKnown RBP24.99■■□□□ 1.59
SHMT1-207ENST00000580002 OSBPL6Q9BZF3 934 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 ASB8Q9H765 288 aa24.99■■□□□ 1.59
SHMT1-207ENST00000580002 CHURC1-FNTBB4DL54 471 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 DCNP07585 359 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 OAS2P29728 719 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 ZXDAP98168 799 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 ELP6Q0PNE2 266 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 LRRC32Q14392 662 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms