RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 GLE1Q53GS7 698 aaKnown RBP8.54□□□□□ -1.04
NUP88-211ENST00000575976 PCID2Q5JVF3 399 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 FNBP1LQ5T0N5 605 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 ALS2CLQ60I27 953 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 LAIR1Q6GTX8 287 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 PNCKQ6P2M8 343 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 LAYNQ6UX15 382 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 GCNT7Q6ZNI0 430 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 MICALCLQ6ZW33 695 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 SYT12Q8IV01 421 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 RAVER1Q8IY67 606 aaKnown RBP8.54□□□□□ -1.04
NUP88-211ENST00000575976 NRSN1Q8IZ57 195 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 AGGF1Q8N302 714 aaeCLIP8.54□□□□□ -1.04
NUP88-211ENST00000575976 MPP5Q8N3R9 675 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 ZCCHC9Q8N567 271 aaKnown RBP8.54□□□□□ -1.04
NUP88-211ENST00000575976 TMEM145Q8NBT3 493 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 PLA2G15Q8NCC3 412 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 BBOF1Q8ND07 529 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 GPR26Q8NDV2 337 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 DENND6BQ8NEG7 585 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 OR4K2Q8NGD2 314 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 STYXQ8WUJ0 223 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 AP2M1Q96CW1 435 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 LOXL4Q96JB6 756 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 ZNF778Q96MU6 729 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 RANBP9Q96S59 729 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 AGAP2Q99490 1192 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 RIOK2Q9BVS4 552 aaKnown RBP8.54□□□□□ -1.04
NUP88-211ENST00000575976 C1QTNF7Q9BXJ2 289 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 ARRDC1-AS1Q9H2J1 176 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 FAM83DQ9H4H8 585 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 EPB41L5Q9HCM4 733 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 XAB2Q9HCS7 855 aaKnown RBP8.54□□□□□ -1.04
NUP88-211ENST00000575976 AASDHPPTQ9NRN7 309 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 SYBUQ9NX95 663 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 BFARQ9NZS9 450 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 WHRNQ9P202 907 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 PKP3Q9Y446 797 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 TCAF1Q9Y4C2 921 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 HS3ST3A1Q9Y663 406 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 FANCMQ8IYD8 2048 aa8.54□□□□□ -1.04
NUP88-211ENST00000575976 A0A1B0GTW7 788 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 HEATR9A2RTY3 570 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 MROH6A6NGR9 719 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 SDR42E2A6NKP2 422 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 K7ESM1 405 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 SMAPO00193 183 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 CCL22O00626 93 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 NDC80O14777 642 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 BCAT2O15382 392 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 BANF1O75531 89 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 SLU7O95391 586 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 SOD1P00441 154 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 RHOXF2BP0C7M4 288 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 GNSP15586 552 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 CD38P28907 300 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 SPAM1P38567 509 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 MPLP40238 635 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 GPR1P46091 355 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ZNF140P52738 457 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 PLTPP55058 493 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 PFN3P60673 137 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 PDE1BQ01064 536 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 DPTQ07507 201 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 DHX9Q08211 1270 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 CALCOCO2Q13137 446 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 INPP5AQ14642 412 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 CCDC6Q16204 474 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 RSPO4Q2I0M5 234 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 MSS51Q4VC12 460 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 TEX35Q5T0J7 233 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 TSTD2Q5T7W7 516 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 HENMT1Q5T8I9 393 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 PEAR1Q5VY43 1037 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 RAET1GQ6H3X3 334 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ESRP1Q6NXG1 681 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 CES3Q6UWW8 571 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ZDHHC24Q6UX98 284 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ZNF765Q7L2R6 523 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ABI3BPQ7Z7G0 1075 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 NLRP8Q86W28 1048 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 PPHLN1Q8NEY8 458 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 OR13H1Q8NG92 308 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 SEC14L1Q92503 715 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 ART4Q93070 314 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 DNAJC1Q96KC8 554 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 SIGLEC10Q96LC7 697 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 RHOXF2Q9BQY4 288 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 IL22Q9GZX6 179 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 IL26Q9NPH9 171 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 CHRAC1Q9NRG0 131 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 RAD18Q9NS91 495 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 NLE1Q9NVX2 485 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 KCTD5Q9NXV2 234 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 NFKBIL1Q9UBC1 381 aaPredicted RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 SLC2A6Q9UGQ3 507 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 FKBPLQ9UIM3 349 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 FNDC3AQ9Y2H6 1198 aaKnown RBP8.53□□□□□ -1.04
NUP88-211ENST00000575976 PCDHGA5Q9Y5G8 931 aa8.53□□□□□ -1.04
NUP88-211ENST00000575976 MAP1BP46821 2468 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms