RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FUCA2Q9BTY2 467 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 STRADBQ9C0K7 418 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ABCG8Q9H221 673 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 DPEP2Q9H4A9 486 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 WDR26Q9H7D7 661 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CARS2Q9HA77 564 aaKnown RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 RDH14Q9HBH5 336 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PCDH18Q9HCL0 1135 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SPTLC3Q9NUV7 552 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 TRNAU1APQ9NX07 287 aaKnown RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 DONSONQ9NYP3 566 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 TMEM9Q9P0T7 183 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 TAAR2Q9P1P5 351 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PHTF1Q9UMS5 762 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SUFUQ9UMX1 484 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 NENFQ9UMX5 172 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SLC17A4Q9Y2C5 497 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SEC16AO15027 2179 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 IGHV5-10-1A0A0J9YXX1 117 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 CAPN8A6NHC0 703 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PSMD11O00231 422 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 DAPK3O43293 454 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 RNF8O76064 485 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CPNE6O95741 557 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CPP00450 1065 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PRLP01236 227 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 IVLP07476 585 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CCDC172P0C7W6 258 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 FGF3P11487 239 aaPredicted RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 CTPS1P17812 591 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 KELP23276 732 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ADCY8P40145 1251 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 RENBPP51606 427 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CYP4F2P78329 520 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CTBSQ01459 385 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PTSQ03393 145 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 MMRN1Q13201 1228 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 NR1I3Q14994 352 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ATP13A4Q4VNC1 1196 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 FAM182AQ5T1J6 154 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CCDC183Q5T5S1 534 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ALG1LQ6GMV1 187 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PPP1R2P3Q6NXS1 205 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 USP53Q70EK8 1073 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 GAS2L3Q86XJ1 694 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 JAMLQ86YT9 394 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 NIPA2Q8N8Q9 360 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 RCBTB1Q8NDN9 531 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ANKRD20A12PQ8NF67 263 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ZDHHC1Q8WTX9 485 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PDCD6IPQ8WUM4 868 aaKnown RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 MAML1Q92585 1016 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 SCAMP4Q969E2 229 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 SGF29Q96ES7 293 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 COX14Q96I36 57 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 SPRY4Q9C004 299 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 B3GNT4Q9C0J1 378 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 ZWILCHQ9H900 591 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 PHPT1Q9NRX4 125 aaPredicted RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 STARD5Q9NSY2 213 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS53-213ENST00000572334 MYO1AQ9UBC5 1043 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 CNOT6Q9ULM6 557 aaKnown RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 PCDHGA4Q9Y5G9 962 aa6.7□□□□□ -1.34
VPS53-213ENST00000572334 V9GYY5 206 aaPredicted RBP6.7□□□□□ -1.34
VPS53-213ENST00000572334 LRRK2Q5S007 2527 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 IGHV1OR21-1A0A087WYE8 117 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 A0A0J9YYE9 177 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 A0A1W2PQ67 120 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 H3BRJ5 948 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 MFSD11O43934 449 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TRBC1P01850 177 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CYP1A2P05177 515 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 JMJD7P0C870 316 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 THRAP10827 490 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 HSPA9P38646 679 aaKnown RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 MMP13P45452 471 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 GNPDA1P46926 289 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 LIMK2P53671 638 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 MAPK10P53779 464 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TPM4P67936 248 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NFKB2Q00653 900 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NIPAL4Q0D2K0 466 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 KLHL30Q0D2K2 578 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 GALNT2Q10471 571 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 SLC10A2Q12908 348 aaPredicted RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 SQSTM1Q13501 440 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ARHGEF7Q14155 803 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ZNF235Q14590 738 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CLCA4Q14CN2 919 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 PAFAH1B3Q15102 231 aaKnown RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 TBR1Q16650 682 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TSR1Q2NL82 804 aaKnown RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 AMZ1Q400G9 498 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 PYCR3Q53H96 274 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 BOLA3Q53S33 107 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 FIGNQ5HY92 759 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 RALGPS1Q5JS13 557 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms