RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TUBB1Q9H4B7 451 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 VCX3AQ9NNX9 186 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 SLC27A5Q9Y2P5 690 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 ANKRD36A6QL64 1941 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 CHD5Q8TDI0 1954 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 BBIP1A8MTZ0 92 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 SYN3O14994 580 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 VILLO15195 856 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 FLT3LGP49771 235 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 APOFQ13790 326 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 SLC5A9Q2M3M2 681 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 SETMARQ53H47 684 aaPredicted RBP22.73■■□□□ 1.23
VPS53-211ENST00000571805 PITRM1Q5JRX3 1037 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 ALG1LQ6GMV1 187 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 RAB44Q7Z6P3 723 aaPredicted RBP22.73■■□□□ 1.23
VPS53-211ENST00000571805 CHERPQ8IWX8 916 aaKnown RBP22.73■■□□□ 1.23
VPS53-211ENST00000571805 CDKN2AIPNLQ96HQ2 116 aa22.73■■□□□ 1.23
VPS53-211ENST00000571805 ZFRQ96KR1 1074 aaKnown RBP22.73■■□□□ 1.23
VPS53-211ENST00000571805 MYOCOSA0A1B0GUC4 107 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 RTN3O95197 1032 aaPredicted RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 CCND3P30281 292 aaPredicted RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 MBTPS1Q14703 1052 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 NADK2Q4G0N4 442 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 ACBD5Q5T8D3 534 aaPredicted RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 PCYOX1LQ8NBM8 494 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 PRPF18Q99633 342 aaKnown RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 CRISPLD1Q9H336 500 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 SNX13Q9Y5W8 968 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 MOXD2PA6NHM9 499 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 SERPINF2P08697 491 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 TACR2P21452 398 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 NME5P56597 212 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 DYNC1I2Q13409 638 aaKnown RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 RBBP5Q15291 538 aaKnown RBP22.72■■□□□ 1.23
VPS53-211ENST00000571805 KIF19Q2TAC6 998 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 MTX3Q5HYI7 312 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 DHFR2Q86XF0 187 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 NSMCE3Q96MG7 304 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 KCNA7Q96RP8 456 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 SLC29A1Q99808 456 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 MED16Q9Y2X0 877 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 RNF11Q9Y3C5 154 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 ACTL7AQ9Y615 435 aa22.72■■□□□ 1.23
VPS53-211ENST00000571805 A0A0D9SEW6 157 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 NDST3O95803 873 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 TXNL4AP83876 142 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 IRAK1BP1Q5VVH5 260 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 TRAF7Q6Q0C0 670 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 RBM44Q6ZP01 1051 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 TRPC4APQ8TEL6 797 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 KIAA1191Q96A73 305 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 PBXIP1Q96AQ6 731 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 B3GALT6Q96L58 329 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 ZNF599Q96NL3 588 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 CCSER2Q9H7U1 834 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 ABCD2Q9UBJ2 740 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 CNOT6Q9ULM6 557 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 A0A1B0GTL3 188 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 NR5A2O00482 541 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 CLASP2O75122 1294 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 CKBP12277 381 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 CAPN3P20807 821 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 IL31Q6EBC2 164 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 AMIGO2Q86SJ2 522 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 CFAP52Q8N1V2 620 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 RBM38Q9H0Z9 239 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 INTS10Q9NVR2 710 aaKnown RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 NLE1Q9NVX2 485 aaPredicted RBP22.71■■□□□ 1.23
VPS53-211ENST00000571805 IKZF3Q9UKT9 509 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 NDUFAF1Q9Y375 327 aa22.71■■□□□ 1.23
VPS53-211ENST00000571805 NME4O00746 187 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 KERAO60938 352 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 VNN2O95498 520 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 ATP6V1B1P15313 513 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 PSMC3P17980 439 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 ATP6V1B2P21281 511 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 FGFR3P22607 806 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 CST5P28325 142 aaPredicted RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 HOXD9P28356 352 aaPredicted RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 ZNF140P52738 457 aaPredicted RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 ARPP19P56211 112 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 INHBEP58166 350 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 C5orf22Q49AR2 442 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 VPS26BQ4G0F5 336 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 FAM171A1Q5VUB5 890 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 PAQR3Q6TCH7 311 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 MIER2Q8N344 545 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 NMD3Q96D46 503 aaKnown RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 HOPXQ9BPY8 73 aaPredicted RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 NOL11Q9H8H0 719 aaKnown RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 SPO11Q9Y5K1 396 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 GBF1Q92538 1859 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 HSPA8P11142 646 aaKnown RBP22.7■■□□□ 1.22
VPS53-211ENST00000571805 GFAPP14136 432 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 KCNQ1P51787 676 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 OR2T34Q8NGX1 318 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 OR2T3Q8NH03 318 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 MGME1Q9BQP7 344 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 GRIP2Q9C0E4 1043 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 DERL2Q9GZP9 239 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms