RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NME1P15531 152 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 TPH1P17752 444 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 DGKAP23743 735 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 NUDT1P36639 197 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CLDN6P56747 220 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 C21orf59P57076 290 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 RPL26P61254 145 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 MPP3Q13368 585 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 C1orf61Q13536 156 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 TEAD4Q15561 434 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CYP1B1Q16678 543 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 LONRF2Q1L5Z9 754 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 HENMT1Q5T8I9 393 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 DRICH1Q6PGQ1 229 aaPredicted RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 USP45Q70EL2 814 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 RABEPKQ7Z6M1 372 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 SLCO6A1Q86UG4 719 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 AGGF1Q8N302 714 aaeCLIP9.19□□□□□ -0.94
VPS35-206ENST00000565228 TTC13Q8NBP0 860 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 COX14Q96I36 57 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 TEX101Q9BY14 249 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 ZDHHC5Q9C0B5 715 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 MAGEE1Q9HCI5 957 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 GDF3Q9NR23 364 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 IL17CQ9P0M4 197 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 TPX2Q9ULW0 747 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 RPL26L1Q9UNX3 145 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 DRG1Q9Y295 367 aaKnown RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 TMEM98Q9Y2Y6 226 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 ARL5AQ9Y689 179 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 COL5A1P20908 1838 aaPredicted RBP9.19□□□□□ -0.94
VPS35-206ENST00000565228 LOC400499M0QZD8 3231 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 PSMD11O00231 422 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 PCDHGA12O60330 932 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 CER1O95813 267 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 IFNB1P01574 187 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 EPOP01588 193 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 SLC4A1P02730 911 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 PTGIRP43119 386 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 RABIFP47224 123 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 EPHB1P54762 984 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 GNG11P61952 73 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 XIAPP98170 497 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 CDK3Q00526 305 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 DPTQ07507 201 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 MTM1Q13496 603 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 NFATC4Q14934 902 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 TRIP13Q15645 432 aaPredicted RBP9.18□□□□□ -0.94
VPS35-206ENST00000565228 PARP6Q2NL67 630 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 P3H1Q32P28 736 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 N4BP2L1Q5TBK1 243 aaPredicted RBP9.18□□□□□ -0.94
VPS35-206ENST00000565228 ANKRD22Q5VYY1 191 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 ALS2CLQ60I27 953 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 XKR5Q6UX68 686 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 MACC1Q6ZN28 852 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 HEATR4Q86WZ0 1026 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 NRROSQ86YC3 692 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 MARCH9Q86YJ5 346 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 NAXDQ8IW45 347 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 OR13C4Q8NGS5 318 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 ACTRT1Q8TDG2 376 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 PBKQ96KB5 322 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 ZNF778Q96MU6 729 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 RTKNQ9BST9 563 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 LRRC61Q9BV99 259 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 FRMD8Q9BZ67 464 aaPredicted RBP9.18□□□□□ -0.94
VPS35-206ENST00000565228 ZFYVE1Q9HBF4 777 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 ARNT2Q9HBZ2 717 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 CDV3Q9UKY7 258 aaKnown RBP9.18□□□□□ -0.94
VPS35-206ENST00000565228 WASF3Q9UPY6 502 aa9.18□□□□□ -0.94
VPS35-206ENST00000565228 GOLGA6L9A6NEM1 432 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 INPP4BO15327 924 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 LDB2O43679 373 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 NRDCO43847 1150 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 KIF5CO60282 957 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A9O60656 530 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 MTX2O75431 263 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 DKK1O94907 266 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 AP2A1O95782 977 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ZNF30P17039 623 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A6P19224 532 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 CSRP1P21291 193 aaKnown RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A1P22309 533 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A4P22310 534 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A3P35503 534 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A5P35504 534 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 COILP38432 576 aaPredicted RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 CETN2P41208 172 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 CDKN1CP49918 316 aaPredicted RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 CCT8P50990 548 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ARSDP51689 593 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 TERF1P54274 439 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 GEMP55040 296 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 KIAA1024LP59773 190 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 YPEL5P62699 121 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 MRPS25P82663 173 aaKnown RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 OVGP1Q12889 678 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 DNAJC3Q13217 504 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 SEMA5AQ13591 1074 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PEX6Q13608 980 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms