RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 LZTR1Q8N653 840 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TMEM74Q96NL1 305 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TRMOQ9BU70 441 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ABCD2Q9UBJ2 740 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ZNF510Q9Y2H8 683 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 BRCA2P51587 3418 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 AQP12BA6NM10 295 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 E9PAM4 449 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 H3BMQ9 156 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 AZIN1O14977 448 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 ACOX3O15254 700 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 THP07101 528 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 PRSS56P0CW18 603 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 GFAPP14136 432 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 PCBP1Q15365 356 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLN3-210ENST00000563874 ZNF554Q86TJ5 538 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 LRRTM3Q86VH5 581 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 AQP12AQ8IXF9 295 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 TNIP2Q8NFZ5 429 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 GIPC3Q8TF64 312 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 ZUFSPQ96AP4 578 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 L3HYPDHQ96EM0 354 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 CENPNQ96H22 339 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 COG8Q96MW5 612 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 HOPXQ9BPY8 73 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 C9orf16Q9BUW7 83 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 ABHD16BQ9H3Z7 469 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 SEMA4BQ9NPR2 832 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 ADARB2Q9NS39 739 aaKnown RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 SH3PXD2BA1X283 911 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 PDHXO00330 501 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 KPNA6O60684 536 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 SNAP29O95721 258 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 HAPLN1P10915 354 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 AARS2Q5JTZ9 985 aaKnown RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 ACBD5Q5T8D3 534 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 ZNF549Q6P9A3 640 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 CCDC117Q8IWD4 279 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 TMEM86AQ8N2M4 240 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 PIAS4Q8N2W9 510 aaPredicted RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 MYRFLQ96LU7 910 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 TRIM15Q9C019 465 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 NOL6Q9H6R4 1146 aaKnown RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 RPF2Q9H7B2 306 aaKnown RBP13.18□□□□□ -0.3
CLN3-210ENST00000563874 ACTR3BQ9P1U1 418 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 POLG2Q9UHN1 485 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 HS3ST4Q9Y661 456 aa13.18□□□□□ -0.3
CLN3-210ENST00000563874 CD1DP15813 335 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 GSK3BP49841 420 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 TNK2Q07912 1038 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 BNIP3Q12983 259 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 NFYCQ13952 458 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 ATP6AP1Q15904 470 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 ZIK1Q3SY52 487 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 HABP4Q5JVS0 413 aaKnown RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 OTUD3Q5T2D3 398 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 TIGD7Q6NT04 549 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 DHRS4L2Q6PKH6 230 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 KCTD8Q6ZWB6 473 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 GPR142Q7Z601 462 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 PHYKPLQ8IUZ5 450 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 DCBLD1Q8N8Z6 715 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 NPLOC4Q8TAT6 608 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 GFM2Q969S9 779 aaKnown RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 VPS50Q96JG6 964 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 SLC25A51Q9H1U9 297 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 HIPK3Q9H422 1215 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 CSNK1G1Q9HCP0 422 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 NCF1BA6NI72 391 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 BBIP1A8MTZ0 92 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 NCF1CA8MVU1 366 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 FGF10O15520 208 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 B3GAT3O94766 335 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 MYL3P08590 195 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 NCF1P14598 390 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 PCSK1P29120 753 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 ATP4BP51164 291 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 SLC14A2Q15849 920 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 PYCR3Q53H96 274 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 ARTNQ5T4W7 220 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 MANEALQ5VSG8 457 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 LCN8Q6JVE9 175 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 PATL1Q86TB9 770 aaKnown RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 MINDY1Q8N5J2 469 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 SMYD1Q8NB12 490 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 TRPV3Q8NET8 790 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 BLOC1S5Q8TDH9 187 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 SEPT8Q92599 483 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 HMCESQ96FZ2 354 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 ALG2Q9H553 416 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 UXTQ9UBK9 157 aaPredicted RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 ARL5AQ9Y689 179 aa13.17□□□□□ -0.3
CLN3-210ENST00000563874 BRCA1P38398 1863 aaKnown RBP13.17□□□□□ -0.3
CLN3-210ENST00000563874 IGLV3-25P01717 112 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CTSHP09668 335 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 MTHFD2P13995 350 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 HSD17B1P14061 328 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CRYBB1P53674 252 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 PAGE3Q5JUK9 113 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 SIRPB2Q5JXA9 342 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms