RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, human

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERC1-215	ENST00000561436	ZNF521	Q96K83	1311 aa		3.88	□□□□□ -1.79
HERC1-215	ENST00000561436	MAPK8IP3	Q9UPT6	1336 aa		3.88	□□□□□ -1.79
HERC1-215	ENST00000561436	RTL9	Q8NET4	1388 aa		3.88	□□□□□ -1.79
HERC1-215	ENST00000561436	TJP1	Q07157	1748 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SCN4A	P35499	1836 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436		A0A0A0MQY5	61 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TRBV5-3	A0A0A0MS03	114 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TRBV5-7	A0A0A0MS05	114 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	GAGE12J	A6NER3	117 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	USP17L23	D6RBM5	183 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TCERG1	O14776	1098 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SLC25A17	O43808	307 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TSPAN9	O75954	239 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	IPO7	O95373	1038 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	WNT1	P04628	370 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PCCA	P05165	728 aa	Predicted RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HEXA	P06865	529 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TFPI	P10646	304 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	ALOX12	P18054	663 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HOXD10	P28358	340 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	MMP13	P45452	471 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	KCNJ4	P48050	445 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	CENPA	P49450	140 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PLCD1	P51178	756 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PRAME	P78395	509 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SP3	Q02447	781 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	CALD1	Q05682	793 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TNFAIP1	Q13829	316 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SMTNL2	Q2TAL5	461 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SLC45A4	Q5BKX6	768 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PXDC1	Q5TGL8	231 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	SNX30	Q5VWJ9	437 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HEPHL1	Q6MZM0	1159 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	CES5A	Q6NT32	575 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HMBOX1	Q6NT76	420 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	C11orf87	Q6NUJ2	197 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	C15orf52	Q6ZUT6	534 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	KIAA2013	Q8IYS2	634 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	FRMD1	Q8N878	549 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	RASSF8	Q8NHQ8	419 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	BICD2	Q8TD16	824 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	DENND1A	Q8TEH3	1009 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	INTS12	Q96CB8	462 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	ZBED3	Q96IU2	234 aa	Predicted RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	MAP7D2	Q96T17	732 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	NCAPG	Q9BPX3	1015 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TRMO	Q9BU70	441 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	NUF2	Q9BZD4	464 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	B3GNT4	Q9C0J1	378 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	ANKRD2	Q9GZV1	360 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	USP44	Q9H0E7	712 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	CCDC68	Q9H2F9	335 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	DBNDD1	Q9H9R9	158 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PCDHB16	Q9NRJ7	776 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	DECR2	Q9NUI1	292 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HAUS2	Q9NVX0	235 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HCFC1R1	Q9NWW0	138 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	NCKIPSD	Q9NZQ3	722 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HSPB7	Q9UBY9	170 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	HAO1	Q9UJM8	370 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	VPS28	Q9UK41	221 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	AAR2	Q9Y312	384 aa	Known RBP	3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	TRIM17	Q9Y577	477 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	PSAT1	Q9Y617	370 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	UTY	O14607	1347 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	ZMYM2	Q9UBW7	1377 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	MED23	Q9ULK4	1368 aa		3.87	□□□□□ -1.79
HERC1-215	ENST00000561436	N4BP2	Q86UW6	1770 aa	Predicted RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	BRCA1	P38398	1863 aa	Known RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436		A0A1W2PQM1	296 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436		A0A1W2PRG0	241 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	DDTL	A6NHG4	134 aa	Predicted RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436		E5RJQ4	531 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	BCAT2	O15382	392 aa	Predicted RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	TLR2	O60603	784 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	ATP2C2	O75185	946 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	UFL1	O94874	794 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	MT-CYB	P00156	380 aa	Predicted RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	KRT10	P13645	584 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	CTPS1	P17812	591 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	MLH1	P40692	756 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	ALDH7A1	P49419	539 aa	Known RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	SLC18A2	Q05940	514 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	ITGAD	Q13349	1161 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	RNPS1	Q15287	305 aa	Known RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	INPP5J	Q15735	1006 aa	Predicted RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	DCAF6	Q58WW2	860 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	PIK3CD-AS1	Q5SR53	167 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	GPATCH4	Q5T3I0	446 aa	Known RBP	3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	TXNDC8	Q6A555	127 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	NCEH1	Q6PIU2	408 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	SHC4	Q6S5L8	630 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	SARM1	Q6SZW1	724 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	IKBIP	Q70UQ0	350 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	DENND6A	Q8IWF6	608 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	FAM217A	Q8IXS0	508 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	HORMAD2	Q8N7B1	307 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	NANOGP1	Q8N7R0	232 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	NRAC	Q8N912	160 aa		3.86	□□□□□ -1.79
HERC1-215	ENST00000561436	C1orf131	Q8NDD1	294 aa	Known RBP	3.86	□□□□□ -1.79

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