RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PCDHGB7Q9Y5F8 929 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 DNMT3AQ9Y6K1 912 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CHD5Q8TDI0 1954 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ILVBLA1L0T0 632 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CCDC162PA2VCL2 907 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TCAF2A6NFQ2 919 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 NEMP2A6NFY4 417 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 C2orf81A6NN90 581 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TMEM233B4DJY2 109 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ARVCFO00192 962 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CFLARO15519 480 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 KDELR3O43731 214 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 KERAO60938 352 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TRPA1O75762 1119 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SUPT7LO94864 414 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TBX18O95935 607 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GNRH1P01148 92 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 JUNP05412 331 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 RHOCP08134 193 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SNRPB2P08579 225 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 FGF4P08620 206 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CD9P21926 228 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PAX7P23759 505 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PSMA3P25788 255 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 HOXD9P28356 352 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ACVRL1P37023 503 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ALDH1A3P47895 512 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SLC11A1P49279 550 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ARSDP51689 593 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF140P52738 457 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PSME3P61289 254 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 RAD51Q06609 339 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ADGRE1Q14246 886 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TAF1AQ15573 450 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SPATS1Q496A3 300 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 AARS2Q5JTZ9 985 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SAMD4BQ5PRF9 694 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 REP15Q6BDI9 236 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 IL31Q6EBC2 164 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 OR52E8Q6IFG1 317 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF783Q6ZMS7 281 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ISCA2Q86U28 154 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 NKAPQ8N5F7 415 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TTC9BQ8N6N2 239 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PCYOX1LQ8NBM8 494 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 HIPK4Q8NE63 616 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ANKRD49Q8WVL7 239 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ROPN1LQ96C74 230 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PHF21BQ96EK2 531 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 C19orf60Q96EN9 201 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TMA16Q96EY4 203 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 MARK4Q96L34 752 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TBATAQ96M53 351 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CASD1Q96PB1 797 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PSKH2Q96QS6 385 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TRIB3Q96RU7 358 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CYP2S1Q96SQ9 504 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TTPALQ9BTX7 342 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GPR62Q9BZJ7 368 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TRIM15Q9C019 465 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 DERL2Q9GZP9 239 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SPAG4Q9NPE6 437 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TAS2R13Q9NYV9 303 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 MARCH4Q9P2E8 410 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 HSFX1Q9UBD0 423 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 RAB26Q9ULW5 256 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 FIS1Q9Y3D6 152 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ASB3Q9Y575 518 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 A0A1B0GVM2 712 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 LCHNA4D1U4 455 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 INSIG1O15503 277 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GFRA3O60609 400 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 NDUFS3O75489 264 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 RHOBTB1O94844 696 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 SLC4A1P02730 911 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 HSPA8P11142 646 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 XRCC1P18887 633 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 KCNA5P22460 613 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GNALP38405 381 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ERFP50548 548 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 PGGT1BP53609 377 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 AQP4P55087 323 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 RACK1P63244 317 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 MRPS22P82650 360 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 NOGQ13253 232 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GALNT3Q14435 633 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 MAP7D1Q3KQU3 841 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 AGKQ53H12 422 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 UNC50Q53HI1 259 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 SFT2D3Q587I9 215 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 LPCAT4Q643R3 524 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 TXNDC11Q6PKC3 985 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 RNF19BQ6ZMZ0 732 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GK5Q6ZS86 529 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GLT6D1Q7Z4J2 308 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CIR1Q86X95 450 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 LRRC43Q8N309 656 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 PTGR2Q8N8N7 351 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 BHLHE22Q8NFJ8 381 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 STAG3L4Q8TBR4 150 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms