RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ELF1P32519 619 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PGM1P36871 562 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 TMPOP42166 694 aaKnown RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 GPD2P43304 727 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 GALNT2Q10471 571 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 DDX10Q13206 875 aaKnown RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 FBXO43Q4G163 708 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PPP6R3Q5H9R7 873 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 KCNT1Q5JUK3 1230 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PDSS1Q5T2R2 415 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 STXBP5Q5T5C0 1151 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 B3GNT6Q6ZMB0 384 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 C15orf39Q6ZRI6 1047 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 TRIM58Q8NG06 486 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 RAB40AQ8WXH6 277 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 TMEM190Q8WZ59 177 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 RFFLQ8WZ73 363 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 NCSTNQ92542 709 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 RND1Q92730 232 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 ABTB1Q969K4 478 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 RNF125Q96EQ8 232 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 LINC00479Q96M42 142 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 NPLQ9BXD5 320 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 SLC26A6Q9BXS9 759 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PAIP1Q9H074 479 aaKnown RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 MROH8Q9H579 483 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 TTC12Q9H892 705 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PCDH9Q9HC56 1237 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 PREBQ9HCU5 417 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 BEX4Q9NWD9 120 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 ADAMTS9Q9P2N4 1935 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 GAGE10A6NGK3 116 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ATP2C2O75185 946 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 GUCY1B2O75343 617 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF821O75541 412 aaPredicted RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 SORBS2O94875 1100 aaKnown RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 MBD4O95243 580 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 F9P00740 461 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 CHRM4P08173 479 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ABCD3P28288 659 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 RXRGP48443 463 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 GOLGA8FQ08AF8 430 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 CAMK1Q14012 370 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 SLC18A3Q16572 532 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 SOWAHAQ2M3V2 549 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF766Q5HY98 468 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ACAD10Q6JQN1 1059 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 INO80CQ6PI98 192 aaPredicted RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 C17orf99Q6UX52 265 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ATF7IPQ6VMQ6 1270 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 WDR63Q8IWG1 891 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF440Q8IYI8 595 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 PPHLN1Q8NEY8 458 aaKnown RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ZCCHC10Q8TBK6 192 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 OTULINQ96BN8 352 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF653Q96CK0 615 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 APOPT1Q96IL0 206 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 CD180Q99467 661 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 EYA3Q99504 573 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 INTS2Q9H0H0 1204 aaKnown RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 EPHX3Q9H6B9 360 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 HCN3Q9P1Z3 774 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 CNOT7Q9UIV1 285 aaKnown RBP3.1□□□□□ -1.91
SCFD1-218ENST00000556256 SUFUQ9UMX1 484 aa3.1□□□□□ -1.91
SCFD1-218ENST00000556256 A0A0J9YWU9 116 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 A0A1W2PQM1 296 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 NDUFAF8A1L188 74 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TEX22C9J3V5 150 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 PER2O15055 1255 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 HBP1O60381 514 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TMEM63AO94886 807 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TBX18O95935 607 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 URODP06132 367 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF26P17031 533 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 SRD5A1P18405 259 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TNFAIP3P21580 790 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 GGT5P36269 586 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 DCTP40126 519 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 USP8P40818 1118 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 PTP4A2Q12974 167 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ARHGEF6Q15052 776 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 RALBP1Q15311 655 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 MAPRE1Q15691 268 aaKnown RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 GPR68Q15743 365 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 NFIL3Q16649 462 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 SFMBT2Q5VUG0 894 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 CES5AQ6NT32 575 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 C1orf122Q6ZSJ8 110 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ADGRG6Q86SQ4 1221 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 APLFQ8IW19 511 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 CHERPQ8IWX8 916 aaKnown RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 WDR20Q8TBZ3 569 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TMEM170AQ8WVE7 144 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 RUFY2Q8WXA3 655 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ZUFSPQ96AP4 578 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ART5Q96L15 291 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms