RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 LRRC61Q9BV99 259 aa12.32□□□□□ -0.44
SYNE2-214ENST00000554928 CLPBQ9H078 707 aa12.32□□□□□ -0.44
SYNE2-214ENST00000554928 BPIFA1Q9NP55 256 aa12.32□□□□□ -0.44
SYNE2-214ENST00000554928 PIH1D1Q9NWS0 290 aaKnown RBP12.32□□□□□ -0.44
SYNE2-214ENST00000554928 TOR4AQ9NXH8 423 aa12.32□□□□□ -0.44
SYNE2-214ENST00000554928 CNOT6Q9ULM6 557 aaKnown RBP12.32□□□□□ -0.44
SYNE2-214ENST00000554928 PCYT1BQ9Y5K3 369 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-214ENST00000554928 CACNA1AO00555 2505 aa12.32□□□□□ -0.44
SYNE2-214ENST00000554928 ZNF185O15231 689 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 INPP4BO15327 924 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 DFNA5O60443 496 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 CEACAM1P13688 526 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 BPIP17213 487 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 GRK6P43250 576 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 GEMP55040 296 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 KIAA1024LP59773 190 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 SRP54P61011 504 aaKnown RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 SIM1P81133 766 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 CDK3Q00526 305 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 DNAJC3Q13217 504 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 MSLNQ13421 630 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 TRIP6Q15654 476 aaKnown RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 LONRF2Q1L5Z9 754 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 ZNF648Q5T619 568 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 KCTD11Q693B1 232 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 RANBP10Q6VN20 620 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 ARHGEF18Q6ZSZ5 1173 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 RASGEF1CQ8N431 466 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 PNPLA1Q8N8W4 532 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 PRELID2Q8N945 189 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 LMX1AQ8TE12 382 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 WDR92Q96MX6 357 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 TMEM121BQ9BXQ6 578 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 TEX101Q9BY14 249 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 WDR26Q9H7D7 661 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 SUDS3Q9H7L9 328 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 ZFYVE1Q9HBF4 777 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 MAGEE1Q9HCI5 957 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 ARFGAP3Q9NP61 516 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 TMEM98Q9Y2Y6 226 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 JRKLQ9Y4A0 524 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 KCTD3Q9Y597 815 aa12.31□□□□□ -0.44
SYNE2-214ENST00000554928 OAS3Q9Y6K5 1087 aaKnown RBP12.31□□□□□ -0.44
SYNE2-214ENST00000554928 NCOR2Q9Y618 2525 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 LY6G6EA0A0G2JKS1 128 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 GPR39O43194 453 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 SIGLEC6O43699 453 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 STK10O94804 968 aaKnown RBP12.3□□□□□ -0.44
SYNE2-214ENST00000554928 IFNB1P01574 187 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 EPOP01588 193 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 CEACAM5P06731 702 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 TSHRP16473 764 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 NFKBIAP25963 317 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 GPR1P46091 355 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 CLDN6P56747 220 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 PPARDQ03181 441 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 DPTQ07507 201 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 PTK2BQ14289 1009 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 SUZ12Q15022 739 aaKnown RBP12.3□□□□□ -0.44
SYNE2-214ENST00000554928 CCNG2Q16589 344 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 PARP6Q2NL67 630 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 DEFB133Q30KQ1 61 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 PRRT3Q5FWE3 981 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 HENMT1Q5T8I9 393 aaKnown RBP12.3□□□□□ -0.44
SYNE2-214ENST00000554928 TTC27Q6P3X3 843 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 DOK6Q6PKX4 331 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 ZNF765Q7L2R6 523 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 SFTPA2Q8IWL1 248 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 CCL4L1Q8NHW4 92 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 BLOC1S5Q8TDH9 187 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 UBE2Q2Q8WVN8 375 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 AP1M1Q9BXS5 423 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 FRMD8Q9BZ67 464 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-214ENST00000554928 GPR63Q9BZJ6 419 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 SLC32A1Q9H598 525 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 KLQ9UEF7 1012 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 APOBEC3BQ9UH17 382 aaKnown RBP12.3□□□□□ -0.44
SYNE2-214ENST00000554928 TMPRSS11EQ9UL52 423 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 ZNF148Q9UQR1 794 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 PLEKHM1Q9Y4G2 1056 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 ST14Q9Y5Y6 855 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 U3KQA8 63 aa12.3□□□□□ -0.44
SYNE2-214ENST00000554928 CACNB4O00305 520 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 TOR1BO14657 336 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 CASC3O15234 703 aaKnown RBP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 YKT6O15498 198 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 AQP9O43315 295 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 KIF5CO60282 957 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 ANXA9O76027 345 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 HOXC4P09017 264 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 FTH1P19P0C7X4 201 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 MYCLP1P12525 358 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 TPH1P17752 444 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 HLA-DPA1P20036 260 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 SPINK2P20155 84 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 RPL22P35268 128 aaKnown RBP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 GRIA1P42261 906 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 HK3P52790 923 aa12.29□□□□□ -0.44
SYNE2-214ENST00000554928 HNRNPKP61978 463 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNE2-214ENST00000554928 PROX2Q3B8N5 592 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms