RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 ZNF599Q96NL3 588 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 BAG1Q99933 345 aaPredicted RBP11.84□□□□□ -0.51
CKAP4-202ENST00000552828 FRMD8Q9BZ67 464 aaPredicted RBP11.84□□□□□ -0.51
CKAP4-202ENST00000552828 DHX35Q9H5Z1 703 aaKnown RBP11.84□□□□□ -0.51
CKAP4-202ENST00000552828 GRPEL1Q9HAV7 217 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 RDH14Q9HBH5 336 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 GPATCH2LQ9NWQ4 482 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 B4GALT6Q9UBX8 382 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 SEPT3Q9UH03 358 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 PCDHGA3Q9Y5H0 932 aa11.84□□□□□ -0.51
CKAP4-202ENST00000552828 EPN1Q9Y6I3 576 aaPredicted RBP11.84□□□□□ -0.51
CKAP4-202ENST00000552828 SCN8AQ9UQD0 1980 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 LRRK1Q38SD2 2015 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 IGHV5-10-1A0A0J9YXX1 117 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ZW10O43264 779 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SOCS5O75159 536 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 PEX11BO96011 259 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CCL4P13236 92 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CR2P20023 1033 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CD1CP29017 333 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ARSDP51689 593 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 MAPK10P53779 464 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 GSDMDP57764 484 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 TRA2AQ13595 282 aaKnown RBP eCLIP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 DPYSQ14117 519 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ACOX1Q15067 660 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CNGA3Q16281 694 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 MAP9Q49MG5 647 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 BOLA3Q53S33 107 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ATG14Q6ZNE5 492 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CYP4V2Q6ZWL3 525 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 RHOT2Q8IXI1 618 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 LZTR1Q8N653 840 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SLC35G2Q8TBE7 412 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ZDHHC1Q8WTX9 485 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 HTR3CQ8WXA8 447 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SCARF2Q96GP6 870 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 PEBP4Q96S96 227 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 KCTD15Q96SI1 283 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SNRNP25Q9BV90 132 aaKnown RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 GSDMCQ9BYG8 508 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 CARS2Q9HA77 564 aaKnown RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SP110Q9HB58 689 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 PHPT1Q9NRX4 125 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 WDR70Q9NW82 654 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 GEMIN8Q9NWZ8 242 aaKnown RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 AKAP7Q9P0M2 348 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-202ENST00000552828 TAAR2Q9P1P5 351 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 SLC17A4Q9Y2C5 497 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 PCDHA13Q9Y5I0 950 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 ST14Q9Y5Y6 855 aa11.83□□□□□ -0.52
CKAP4-202ENST00000552828 UNC13CQ8NB66 2214 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 SOWAHDA6NJG2 315 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 RHPN2P1A8MT19 583 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 A8MX80 341 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 STMND1H3BQB6 276 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 PSMD11O00231 422 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 DFFAO00273 331 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 DAPK3O43293 454 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 PROSCO94903 275 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 HEXIM1O94992 359 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 NDUFA10O95299 355 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 ECEL1O95672 775 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 FGF3P11487 239 aaPredicted RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 ALDH4A1P30038 563 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 VIPR1P32241 457 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 HSPA9P38646 679 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 ARHGAP25P42331 645 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 SSR1P43307 286 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 LIMK2P53671 638 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 MAZP56270 477 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 SLC10A7Q0GE19 358 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 ILF3Q12906 894 aaKnown RBP eCLIP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 PEX6Q13608 980 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 LBRQ14739 615 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 HADHQ16836 314 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 AMZ1Q400G9 498 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 TMCO4Q5TGY1 634 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 HEATR4Q86WZ0 1026 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 OR4D9Q8NGE8 314 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 NKD1Q969G9 470 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 NUS1Q96E22 293 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 DTD2Q96FN9 168 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 TAAR9Q96RI9 348 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 NUDT22Q9BRQ3 303 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 SLC12A9Q9BXP2 914 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 CWC15Q9P013 229 aaKnown RBP11.82□□□□□ -0.52
CKAP4-202ENST00000552828 SUFUQ9UMX1 484 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 PCDHGC4Q9Y5F7 938 aa11.82□□□□□ -0.52
CKAP4-202ENST00000552828 AGRPO00253 132 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 PPFIA2O75334 1257 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 MTA2O94776 668 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 IVLP07476 585 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 LHCGRP22888 699 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 NFKBIAP25963 317 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 IL1R2P27930 398 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 ETV3P41162 512 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 CYP4F2P78329 520 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 CDK3Q00526 305 aa11.81□□□□□ -0.52
CKAP4-202ENST00000552828 NFKB2Q00653 900 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms