RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CDK4P11802 303 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 ITGB6P18564 788 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 CLCN5P51795 746 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 DNAJB13P59910 316 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 UFM1P61960 85 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 PCBP1Q15365 356 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP28-214ENST00000545540 CYP51A1Q16850 503 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 PAGE3Q5JUK9 113 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 EPHX4Q8IUS5 362 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 RIN3Q8TB24 985 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 ARRDC2Q8TBH0 407 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 HSPBAP1Q96EW2 488 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SYT17Q9BSW7 474 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 GALNT8Q9NY28 637 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 TMEM181Q9P2C4 612 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SUCOQ9UBS9 1254 aaKnown RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 VPS28Q9UK41 221 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 NPEPPSL1A6NEC2 478 aa15□□□□□ -0.01
USP28-214ENST00000545540 FGF10O15520 208 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 HERVK_113P63132 956 aa15□□□□□ -0.01
USP28-214ENST00000545540 TIGD2Q4W5G0 525 aa15□□□□□ -0.01
USP28-214ENST00000545540 TIGD7Q6NT04 549 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 ANKRD23Q86SG2 305 aa15□□□□□ -0.01
USP28-214ENST00000545540 CLVS1Q8IUQ0 354 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 CMTR2Q8IYT2 770 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 AFAP1L2Q8N4X5 818 aa15□□□□□ -0.01
USP28-214ENST00000545540 MAGEE2Q8TD90 523 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 CCDC97Q96F63 343 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 RMND5BQ96G75 393 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 ERVK-6Q9BXR3 956 aa15□□□□□ -0.01
USP28-214ENST00000545540 POLG2Q9UHN1 485 aa15□□□□□ -0.01
USP28-214ENST00000545540 PCDHGC4Q9Y5F7 938 aa15□□□□□ -0.01
USP28-214ENST00000545540 SPO11Q9Y5K1 396 aa15□□□□□ -0.01
USP28-214ENST00000545540 AZIN1O14977 448 aa15□□□□□ -0.01
USP28-214ENST00000545540 AP1G1O43747 822 aa15□□□□□ -0.01
USP28-214ENST00000545540 KATNA1O75449 491 aa15□□□□□ -0.01
USP28-214ENST00000545540 TRMUO75648 421 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 TFPTP0C1Z6 253 aa15□□□□□ -0.01
USP28-214ENST00000545540 ATXN1LP0C7T5 689 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 CTGFP29279 349 aa15□□□□□ -0.01
USP28-214ENST00000545540 EIF4EBP2Q13542 120 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 RFTN1Q14699 578 aaPredicted RBP15□□□□□ -0.01
USP28-214ENST00000545540 SAMD4BQ5PRF9 694 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 MORN1Q5T089 497 aa15□□□□□ -0.01
USP28-214ENST00000545540 PKMYT1Q99640 499 aa15□□□□□ -0.01
USP28-214ENST00000545540 SLC2A11Q9BYW1 496 aa15□□□□□ -0.01
USP28-214ENST00000545540 ZYG11BQ9C0D3 744 aa15□□□□□ -0.01
USP28-214ENST00000545540 ZNF696Q9H7X3 374 aa15□□□□□ -0.01
USP28-214ENST00000545540 INTS7Q9NVH2 962 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 TDRKHQ9Y2W6 561 aaKnown RBP15□□□□□ -0.01
USP28-214ENST00000545540 XIRP2A4UGR9 3374 aa15□□□□□ -0.01
USP28-214ENST00000545540 TNPO2O14787 897 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 H6PDO95479 791 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 PIM1P11309 404 aaPredicted RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 SLC7A1P30825 629 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 KPNA2P52292 529 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 CTBSQ01459 385 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 BRMS1LQ5PSV4 323 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 TAF2Q6P1X5 1199 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 CLYBLQ8N0X4 340 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 CATSPER1Q8NEC5 780 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 OR4K2Q8NGD2 314 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 PBXIP1Q96AQ6 731 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 UPF3AQ9H1J1 476 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 CRISPLD1Q9H336 500 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 RNF112Q9ULX5 631 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 ZFC3H1O60293 1989 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 A8MX80 341 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 RAMP2O60895 175 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 NIPSNAP2O75323 286 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 C8BP07358 591 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 NR1H2P55055 460 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 TAF10Q12962 218 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 APOFQ13790 326 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 ZNF235Q14590 738 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 FIBCD1Q8N539 461 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 CDYL2Q8N8U2 506 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 OR2T34Q8NGX1 318 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 OR2T3Q8NH03 318 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 CALML6Q8TD86 181 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 ZC3H15Q8WU90 426 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 IRGQQ8WZA9 623 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 ZNF597Q96LX8 424 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 GPR21Q99679 349 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 PRKD2Q9BZL6 878 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 NAA50Q9GZZ1 169 aaKnown RBP14.99□□□□□ -0.01
USP28-214ENST00000545540 MYRFQ9Y2G1 1151 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 GIT1Q9Y2X7 761 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 NDUFAF1Q9Y375 327 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 RALGAPA2Q2PPJ7 1873 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 DHRS12A0PJE2 317 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 AP3B1O00203 1094 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 BTN3A1O00481 513 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 EI24O14681 340 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 STAMBPO95630 424 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 GATMP50440 423 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 SEMG2Q02383 582 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 NFYCQ13952 458 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 PYCR3Q53H96 274 aa14.99□□□□□ -0.01
USP28-214ENST00000545540 SMYD5Q6GMV2 418 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms