RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	IFI44	Q8TCB0	444 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	HTR3C	Q8WXA8	447 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	KRT35	Q92764	455 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	COL26A1	Q96A83	441 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	TADA1	Q96BN2	335 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	NXPE2	Q96DL1	559 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.78	□□□□□ -0.52	2e-6	■■■■□ 21.5
HDAC4-216	ENST00000544989	DEPDC7	Q96QD5	511 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	GSDMC	Q9BYG8	508 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	NRSN2	Q9GZP1	204 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	LACRT	Q9GZZ8	138 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	CLPB	Q9H078	707 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	GOLPH3	Q9H4A6	298 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	MAGEE1	Q9HCI5	957 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	GOLGA6A	Q9NYA3	693 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	FAM153A	Q9UHL3	310 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	GPR34	Q9UPC5	381 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	CLCA2	Q9UQC9	943 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	REXO2	Q9Y3B8	237 aa	Known RBP	11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	PTPRB	P23467	1997 aa		11.78	□□□□□ -0.52
HDAC4-216	ENST00000544989	LY6G6E	A0A0G2JKS1	128 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TMEM202	A6NGA9	273 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	KRT86	O43790	486 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	OPA1	O60313	960 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TCEA3	O75764	348 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	CLDN7	O95471	211 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	NDST3	O95803	873 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	MT-CO3	P00414	261 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	EPO	P01588	193 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PTMA	P06454	111 aa	Known RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	IVL	P07476	585 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PECAM1	P16284	738 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	INSM1	Q01101	510 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ILF3	Q12906	894 aa	Known RBP eCLIP	11.77	□□□□□ -0.53	2e-8	■□□□□ 8.2
HDAC4-216	ENST00000544989	C1orf61	Q13536	156 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	NOMO1	Q15155	1222 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ZDHHC20	Q5W0Z9	365 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PDPK2P	Q6A1A2	396 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ITPRIPL1	Q6GPH6	555 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	KDM7A	Q6ZMT4	941 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TAF8	Q7Z7C8	310 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ZC3H18	Q86VM9	953 aa	Known RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	DCBLD1	Q8N8Z6	715 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TTC13	Q8NBP0	860 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	MAPK15	Q8TD08	544 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	LRRN4	Q8WUT4	740 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	OR1E3	Q8WZA6	343 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	LRRC45	Q96CN5	670 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PDXP	Q96GD0	296 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	HIC2	Q96JB3	615 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TRIB3	Q96RU7	358 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	OSBPL8	Q9BZF1	889 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ABCG8	Q9H221	673 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TRABD	Q9H4I3	376 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	CARS2	Q9HA77	564 aa	Known RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	ZFYVE1	Q9HBF4	777 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	CYP4F12	Q9HCS2	524 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	FGF22	Q9HCT0	170 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	MOSPD1	Q9UJG1	213 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	PADI4	Q9UM07	663 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	TFR2	Q9UP52	801 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	SLC17A4	Q9Y2C5	497 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	DUSP10	Q9Y6W6	482 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989		U3KQA8	63 aa		11.77	□□□□□ -0.53
HDAC4-216	ENST00000544989	MACROD2	A1Z1Q3	448 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CPED1	A4D0V7	1026 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	GRID2IP	A4D2P6	1211 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	GPR89A	B7ZAQ6	455 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989		H7C0C1	242 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	ARHGAP6	O43182	974 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CEACAM5	P06731	702 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	GPR89B	P0CG08	455 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	ATP5O	P48047	213 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	MARCKSL1	P49006	195 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	SPINT3	P49223	89 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	DCDC1	P59894	354 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	WASHC5	Q12768	1159 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.76	□□□□□ -0.53	3e-6	■■■■□ 23.4
HDAC4-216	ENST00000544989	MPP3	Q13368	585 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CAMK2B	Q13554	666 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	LRP8	Q14114	963 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	IHH	Q14623	411 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CDKN3	Q16667	212 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CDCP2	Q5VXM1	449 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	PID1	Q7Z2X4	250 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	SLC35F3	Q8IY50	421 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	GPBAR1	Q8TDU6	330 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	SCARF2	Q96GP6	870 aa	Predicted RBP	11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	FCRL5	Q96RD9	977 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	ZSCAN5A	Q9BUG6	496 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	LGR4	Q9BXB1	951 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	HEMGN	Q9BXL5	484 aa		11.76	□□□□□ -0.53
HDAC4-216	ENST00000544989	CEP41	Q9BYV8	373 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms