RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 C19orf18Q8NEA5 215 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 BHMTQ93088 406 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 A0A087X1B8 175 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PRORSD1PA6NEY8 169 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ARPC2O15144 300 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 TOMM70O94826 608 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 GUCA1CO95843 209 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 FUCA1P04066 466 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 GPIP06744 558 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ST8SIA6P61647 398 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 TRAP1Q12931 704 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ZRANB3Q5FWF4 1079 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 TJAP1Q5JTD0 557 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 C10orf120Q5SQS8 335 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 FAM91A1Q658Y4 838 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PTRHD1Q6GMV3 140 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PGM2L1Q6PCE3 622 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 CAMKK1Q8N5S9 505 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 KBTBD7Q8WVZ9 684 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 STARD8Q92502 1023 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 HNRNPABQ99729 332 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 GPBP1L1Q9HC44 474 aaPredicted RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 MOV10Q9HCE1 1003 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 CNTN3Q9P232 1028 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ADGRE2Q9UHX3 823 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 RIMS3Q9UJD0 308 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 SPATA31C2B4DYI2 1134 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PTPRAP18433 802 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 OPRL1P41146 370 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 WNT7BP56706 349 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PRKG2Q13237 762 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 RABL3Q5HYI8 236 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 CPSF7Q8N684 471 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PNPT1Q8TCS8 783 aaKnown RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 GTF3C2Q8WUA4 911 aaPredicted RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 FBXL18Q96ME1 805 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 SNTG2Q9NY99 539 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ILVBLA1L0T0 632 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 PLOD2O00469 737 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 PLA2G6O60733 806 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 WBP4O75554 376 aaKnown RBP14.21□□□□□ -0.14
LIMS1-215ENST00000544547 FBXO21O94952 628 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF286BP0CG31 522 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 SLC26A3P40879 764 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 PAN2Q504Q3 1202 aaKnown RBP14.21□□□□□ -0.14
LIMS1-215ENST00000544547 CCDC149Q6ZUS6 474 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 CPNE9Q8IYJ1 553 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 SPATA22Q8NHS9 363 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF347Q96SE7 839 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 CHCHD6Q9BRQ6 235 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 RHOBTB2Q9BYZ6 727 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 GPR63Q9BZJ6 419 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM134Q9H6X4 195 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 POLG2Q9UHN1 485 aa14.21□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF99A8MXY4 864 aaPredicted RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 CPSF4O95639 269 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 GLP2RO95838 553 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 IRF1P10914 325 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 AKAP5P24588 427 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 KRT6CP48668 564 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 DDX39BQ13838 428 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 HERC3Q15034 1050 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 ESRP1Q6NXG1 681 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 ILDR2Q71H61 639 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 ADCK2Q7Z695 626 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 DDX53Q86TM3 631 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 MIB1Q86YT6 1006 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM126BQ8IUX1 230 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 SPPL2AQ8TCT8 520 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 QKIQ96PU8 341 aaKnown RBP eCLIP14.2□□□□□ -0.147e-12■■■■■ 80.9
LIMS1-215ENST00000544547 ABCG8Q9H221 673 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM245Q9H330 911 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 ZFP14Q9HCL3 533 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TRHDEQ9UKU6 1024 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 BTN3A1O00481 513 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 MSH3P20585 1137 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 KCNJ8Q15842 424 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 HSDL1Q3SXM5 330 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 GPR158Q5T848 1215 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TRPV3Q8NET8 790 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM74Q96NL1 305 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TWNKQ96RR1 684 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 GAD1Q99259 594 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 DHRS4Q9BTZ2 278 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TRMT6Q9UJA5 497 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 ERGIC3Q9Y282 383 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TIMM13Q9Y5L4 95 aaPredicted RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 BCKDKO14874 412 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 LRIG2O94898 1065 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 SERPIND1P05546 499 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 FSCN1Q16658 493 aaKnown RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 CACHD1Q5VU97 1274 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TEKT5Q96M29 485 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 RPRD1AQ96P16 312 aaPredicted RBP14.2□□□□□ -0.14
LIMS1-215ENST00000544547 OSBPL10Q9BXB5 764 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 TEX12Q9BXU0 123 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 HSFX1Q9UBD0 423 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 KLHL3Q9UH77 587 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 DUSP12Q9UNI6 340 aa14.2□□□□□ -0.14
LIMS1-215ENST00000544547 A0A1W2PQ72 361 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms