RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CNTNAP2Q9UHC6 1331 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SAMD9Q5K651 1589 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 TTLL8A6PVC2 850 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 IPO13O94829 963 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 GCP02774 474 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 IFNA6P05013 189 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ANXA5P08758 320 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 FSHRP23945 695 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 GRK5P34947 590 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SCNN1DP51172 638 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SSTP61278 116 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 GALNT1Q10472 559 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 DGLUCYQ7Z3D6 616 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NOXA1Q86UR1 476 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 KIAA0895Q8NCT3 520 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SLC7A14Q8TBB6 771 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 STON2Q8WXE9 905 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 RIT1Q92963 219 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 RC3H2Q9HBD1 1191 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 ACSL5Q9ULC5 683 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ZNF335Q9H4Z2 1342 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 MYOCOSA0A1B0GUC4 107 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 OR10H3O60404 316 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ATP6AP2O75787 350 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 AKAP3O75969 853 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PTTG1O95997 202 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ETV3P41162 512 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 SLC13A2Q13183 592 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 DSC3Q14574 896 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 UGT8Q16880 541 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CRTC2Q53ET0 693 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 IDNKQ5T6J7 187 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ADGRF4Q8IZF3 695 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 THEM5Q8N1Q8 247 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 TOMM5Q8N4H5 51 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 OR7G2Q8NG99 324 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 RXFP2Q8WXD0 754 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZNF518BQ9C0D4 1074 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CDHR5Q9HBB8 845 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 UFSP2Q9NUQ7 469 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 HOXC10Q9NYD6 342 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZNF510Q9Y2H8 683 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZC3H4Q9UPT8 1303 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 ANKRD33BA6NCL7 494 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 C2orf81A6NN90 581 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 SSX4O60224 188 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 NOBOXO60393 691 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 DNASE1P24855 282 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ACSL1P33121 698 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CRATP43155 626 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ACADSBP45954 432 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 LIPEQ05469 1076 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 FAM69CQ0P6D2 419 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 BIKQ13323 160 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 COTL1Q14019 142 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 OR52E8Q6IFG1 317 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PAOXQ6QHF9 649 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 MOB2Q70IA6 237 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CAND1Q86VP6 1230 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZMYM5Q9UJ78 669 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CMAHPQ9Y471 501 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 INMTO95050 263 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 TPH1P17752 444 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CLK2P49760 499 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 SMIM11AP58511 58 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 HTRA4P83105 476 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 ADAM15Q13444 863 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 LRRC69Q6ZNQ3 347 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 FAM220AQ7Z4H9 259 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ANKRD52Q8NB46 1076 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 BBS4Q96RK4 519 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 KCTD15Q96SI1 283 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 CLPBQ9H078 707 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ERVK-5Q9HDB9 667 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 TIGARQ9NQ88 270 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 MIEF1Q9NQG6 463 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PRDM5Q9NQX1 630 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 GGA3Q9NZ52 723 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 KCNN3Q9UGI6 736 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PRMT5O14744 637 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 MPZL2O60487 215 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CYP2F1P24903 491 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PRKCIP41743 596 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PSMA6P60900 246 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 CDH17Q12864 832 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ILF3Q12906 894 aaKnown RBP eCLIP8.74□□□□□ -1.01
YBX3-208ENST00000540447 GOLGA7BQ2TAP0 167 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 EPHA10Q5JZY3 1008 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ATAD3CQ5T2N8 411 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 PRAMEF17Q5VTA0 474 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 DPPA2Q7Z7J5 298 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 SYVN1Q86TM6 617 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 DCPSQ96C86 337 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 WACQ9BTA9 647 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZNF416Q9BWM5 594 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ALG2Q9H553 416 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ST3GAL5Q9UNP4 418 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 WDR7Q9Y4E6 1490 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ITSN2Q9NZM3 1697 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 SCAMP1O15126 338 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms