RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NRSN1Q8IZ57 195 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 LRRC57Q8N9N7 239 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 KYQ8NBH2 561 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 SPATA22Q8NHS9 363 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 SCG3Q8WXD2 468 aaKnown RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 AP2M1Q96CW1 435 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 AGAP2Q99490 1192 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 MLPHQ9BV36 600 aaPredicted RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 HEMGNQ9BXL5 484 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 ADGRE3Q9BY15 652 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 SIRPGQ9P1W8 387 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 DKK4Q9UBT3 224 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 MOSPD1Q9UJG1 213 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 GPR34Q9UPC5 381 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 C1orf232A0A0U1RR37 186 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 MT-CYBP00156 380 aaPredicted RBP14.74□□□□□ -0.05
USP28-204ENST00000537642 POLD2P49005 469 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 COPS2P61201 443 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 SLC14A2Q15849 920 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 PCSK7Q16549 785 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 KDELC2Q7Z4H8 507 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 TAF8Q7Z7C8 310 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 RAVER1Q8IY67 606 aaKnown RBP14.74□□□□□ -0.05
USP28-204ENST00000537642 ARL10Q8N8L6 244 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 CCL4L1Q8NHW4 92 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 KIAA1524Q8TCG1 905 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 MAPK15Q8TD08 544 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 PTCD2Q8WV60 388 aaKnown RBP14.74□□□□□ -0.05
USP28-204ENST00000537642 QKIQ96PU8 341 aaKnown RBP eCLIP14.74□□□□□ -0.05
USP28-204ENST00000537642 WDR24Q96S15 920 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 DESI2Q9BSY9 194 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 RIOK2Q9BVS4 552 aaKnown RBP14.74□□□□□ -0.05
USP28-204ENST00000537642 CARS2Q9HA77 564 aaKnown RBP14.74□□□□□ -0.05
USP28-204ENST00000537642 GULP1Q9UBP9 304 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 TRIM10Q9UDY6 481 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 PADI4Q9UM07 663 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 SLC17A4Q9Y2C5 497 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 ZZEF1O43149 2961 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 CELSR3Q9NYQ7 3312 aa14.74□□□□□ -0.05
USP28-204ENST00000537642 LAMA5O15230 3695 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 CCDC66A2RUB6 948 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 APOC4-APOC2K7ER74 178 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 CASC3O15234 703 aaKnown RBP14.73□□□□□ -0.05
USP28-204ENST00000537642 APOC2P02655 101 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 SPINT3P49223 89 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 CDK18Q07002 472 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 LYSMD3Q7Z3D4 306 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 TRIM74Q86UV6 250 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 SFTPA2Q8IWL1 248 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 ALG3Q92685 438 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 NAT6Q93015 286 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 EID2BQ96D98 161 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 ABCG4Q9H172 646 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 SUDS3Q9H7L9 328 aaPredicted RBP14.73□□□□□ -0.05
USP28-204ENST00000537642 UBP1Q9NZI7 540 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 SUFUQ9UMX1 484 aa14.73□□□□□ -0.05
USP28-204ENST00000537642 URB1O60287 2271 aaKnown RBP14.73□□□□□ -0.05
USP28-204ENST00000537642 ZFC3H1O60293 1989 aaKnown RBP14.73□□□□□ -0.05
USP28-204ENST00000537642 MACROD2A1Z1Q3 448 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 HACD1B0YJ81 288 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 MTSS1O43312 755 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 PMPCBO75439 489 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NDST3O95803 873 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 PYGLP06737 847 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 IVLP07476 585 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 PIRTP0C851 137 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NFKB1P19838 968 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 PTPN7P35236 360 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 GNPDA1P46926 289 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 RWDD2BP57060 319 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 XRCC4Q13426 336 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 RTP5Q14D33 572 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NOMO1Q15155 1222 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 HENMT1Q5T8I9 393 aaKnown RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 AADACL2Q6P093 401 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 OGFOD3Q6PK18 319 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 DOK6Q6PKX4 331 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 KDELC1Q6UW63 502 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NRROSQ86YC3 692 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 ZNF567Q8N184 647 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 FAM46DQ8NEK8 389 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 GPR156Q8NFN8 814 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 CCHCR1Q8TD31 782 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 GPBAR1Q8TDU6 330 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 HTR3CQ8WXA8 447 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NXPE2Q96DL1 559 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 SCARF2Q96GP6 870 aaPredicted RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 COX14Q96I36 57 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 HIC2Q96JB3 615 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 DEPDC7Q96QD5 511 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 OSBPL8Q9BZF1 889 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 NRSN2Q9GZP1 204 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 C10orf88Q9H8K7 445 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 MAGEE1Q9HCI5 957 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 TRNAU1APQ9NX07 287 aaKnown RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 PKD2L2Q9NZM6 624 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 KLHL8Q9P2G9 620 aaPredicted RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 RABGEF1Q9UJ41 708 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 CNOT6Q9ULM6 557 aaKnown RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 EFR3BQ9Y2G0 817 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms