RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 WDR6Q9NNW5 1121 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 GIMAP4Q9NUV9 329 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TMEM216Q9P0N5 145 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TMEM9Q9P0T7 183 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 KLHL8Q9P2G9 620 aaPredicted RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 TTC3P53804 2025 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 NUP205Q92621 2012 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 ABCB1P08183 1280 aaPredicted RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 CDH1P12830 882 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TGM1P22735 817 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 POLR2IP36954 125 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 RHDQ02161 417 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TNK2Q07912 1038 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TRIM25Q14258 630 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 PAGE2BQ5JRK9 111 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIG1-203ENST00000536218 ABRAXAS1Q6UWZ7 409 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 PLEKHG7Q6ZR37 379 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 ZNF280BQ86YH2 543 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 GRAMD2AQ8IUY3 354 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 OSCP1Q8WVF1 389 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SIGLEC10Q96LC7 697 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 CDK5RAP1Q96SZ6 601 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 COLEC11Q9BWP8 271 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 NUAK1O60285 661 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 TMCC2O75069 709 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 GLRA3O75311 464 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 DLGAP3O95886 979 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 C1QAP02745 245 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SPCS2Q15005 226 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 MRPL10Q7Z7H8 261 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 GALNT13Q8IUC8 556 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 NATD1Q8N6N6 113 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SNX19Q92543 992 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SLCO4A1Q96BD0 722 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 ATXN7L3BQ96GX2 97 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 MED30Q96HR3 178 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 MOV10Q9HCE1 1003 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 TRIM39Q9HCM9 518 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 DDX28Q9NUL7 540 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 C9IYK1 514 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TIMM44O43615 452 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PRKCAP17252 672 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 MYF6P23409 242 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 MGAT1P26572 445 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 GRIK1P39086 918 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PSME3P61289 254 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 MRPS15P82914 257 aaKnown RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 SP3Q02447 781 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PPP4R4Q6NUP7 873 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 ZNF567Q8N184 647 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 CSF3RQ99062 836 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 APOL2Q9BQE5 337 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 SLC39A3Q9BRY0 314 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 DGCR6LQ9BY27 220 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 ATP13A3Q9H7F0 1226 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 RMND5AQ9H871 391 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 MKS1Q9NXB0 559 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 UBP1Q9NZI7 540 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PKD2L2Q9NZM6 624 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 COPG2Q9UBF2 871 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 OR12D3Q9UGF7 316 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 IPO11Q9UI26 975 aaKnown RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 HHLA1C9JL84 531 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 E7ENX8 843 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 HOXC11O43248 304 aaPredicted RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 B4GALT3O60512 393 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 F7P08709 466 aaPredicted RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 TMBIM6P55061 237 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TUBA1BP68363 451 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 ECT2LQ008S8 904 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TUSC3Q13454 348 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 LRIT3Q3SXY7 679 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 INTS6LQ5JSJ4 861 aaKnown RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 PRR23CQ6ZRP0 262 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TUBA1AQ71U36 451 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 FIG4Q92562 907 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PBXIP1Q96AQ6 731 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 ASB9Q96DX5 294 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 NRBF2Q96F24 287 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 CNDP1Q96KN2 507 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TCF12Q99081 682 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 EBNA1BP2Q99848 306 aaKnown RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 WDR12Q9GZL7 423 aaKnown RBP13.96□□□□□ -0.17
LIG1-203ENST00000536218 SCUBE2Q9NQ36 999 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 FBXW11Q9UKB1 542 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 TCAF1Q9Y4C2 921 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 PTCH2Q9Y6C5 1203 aa13.96□□□□□ -0.17
LIG1-203ENST00000536218 ZNF623O75123 536 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 KRT8P05787 483 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 GLDCP23378 1020 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 MPSTP25325 297 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 OR1G1P47890 313 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 PGFP49763 221 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 RACK1P63244 317 aaKnown RBP13.95□□□□□ -0.18
LIG1-203ENST00000536218 CD300LGQ6UXG3 332 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 SLCO6A1Q86UG4 719 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 TAC4Q86UU9 113 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 NPWQ8N729 165 aa13.95□□□□□ -0.18
LIG1-203ENST00000536218 KLHDC9Q8NEP7 349 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms