RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 C6orf52Q5T4I8 152 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 RSPO2Q6UXX9 243 aaPredicted RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 CYP2R1Q6VVX0 501 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 DDIASQ8IXT1 998 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 OR7D4Q8NG98 312 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 TOP1MTQ969P6 601 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 RMDN1Q96DB5 314 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 NSUN5Q96P11 429 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 SLC39A3Q9BRY0 314 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 AARSD1Q9BTE6 412 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 SPON2Q9BUD6 331 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 SEMA6AQ9H2E6 1030 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 GIMAP2Q9UG22 337 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 PCDHGB4Q9UN71 923 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 PCDHGB5Q9Y5G0 923 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 TANC1Q9C0D5 1861 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 TMEM88BA6NKF7 163 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 AZIN1O14977 448 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 PIP5K1BO14986 540 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 RHOBTB1O94844 696 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 C8BP07358 591 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 MTHFD2P13995 350 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 ATP4BP51164 291 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SUOXP51687 545 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 FOXA1P55317 472 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 GNA12Q03113 381 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TRAP1Q12931 704 aaKnown RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 MAP7D1Q3KQU3 841 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SAMD4BQ5PRF9 694 aaKnown RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 FUNDC1Q8IVP5 155 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 RHEBL1Q8TAI7 183 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TRPC4APQ8TEL6 797 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TWIST2Q8WVJ9 160 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 EXOC2Q96KP1 924 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 GLT1D1Q96MS3 346 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 ZNF599Q96NL3 588 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 KCNA7Q96RP8 456 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 CCDC68Q9H2F9 335 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TMEM181Q9P2C4 612 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 A0A0J9YYE9 177 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SUPT3HB4E1H0 165 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 NR5A2O00482 541 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SUPT3HO75486 399 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 FGF4P08620 206 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 PABPC4LP0CB38 370 aaKnown RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 GPX3P22352 226 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 FMO4P31512 558 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SLC6A4P31645 630 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 HSPA13P48723 471 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SCNN1BP51168 640 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 KPNA1P52294 538 aaPredicted RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 SLC7A2P52569 658 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 GPR17Q13304 367 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SATL1Q86VE3 508 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 PCYOX1LQ8NBM8 494 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 SPATA17Q96L03 361 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TRIB3Q96RU7 358 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 ATOH8Q96SQ7 321 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 CINPQ9BW66 212 aaPredicted RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 NACA2Q9H009 215 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 TFB2MQ9H5Q4 396 aaKnown RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 TMEM161AQ9NX61 479 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 CD300AQ9UGN4 299 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 APPL1Q9UKG1 709 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 RNF112Q9ULX5 631 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 AK5Q9Y6K8 562 aa13.12□□□□□ -0.31
LDLR-203ENST00000535915 ZFP37Q9Y6Q3 630 aaPredicted RBP13.12□□□□□ -0.31
LDLR-203ENST00000535915 CLASP2O75122 1294 aaKnown RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 CSPG5O95196 566 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 VNN2O95498 520 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 ALDH2P05091 517 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 HOXD9P28356 352 aaPredicted RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 GATMP50440 423 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 CDKL1Q00532 357 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 TYSND1Q2T9J0 566 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 PAQR3Q6TCH7 311 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 GLT6D1Q7Z4J2 308 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 OR4K2Q8NGD2 314 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 RIN3Q8TB24 985 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 LRTOMTQ8WZ04 291 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 MGME1Q9BQP7 344 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 MAGEH1Q9H213 219 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 SYTL2Q9HCH5 934 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 INTS10Q9NVR2 710 aaKnown RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 NLE1Q9NVX2 485 aaPredicted RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 TAS2R13Q9NYV9 303 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 HCSTQ9UBK5 93 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 SEPT3Q9UH03 358 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 SPO11Q9Y5K1 396 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 NT5C1B-RDH14C9J2C7 533 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 ACSL4O60488 711 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 STAMBPO95630 424 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 CAPNS1P04632 268 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 SMIM18P0DKX4 95 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 FGFR3P22607 806 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 EEF1DP29692 281 aaKnown RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 CAP1Q01518 475 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 GK3PQ14409 553 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 GRB7Q14451 532 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 NRF1Q16656 503 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms