RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 RHOT1Q8IXI2 618 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 RAVER1Q8IY67 606 aaKnown RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 FBXO39Q8N4B4 442 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 ARRDC2Q8TBH0 407 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 LIN37Q96GY3 246 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 UBL7Q96S82 380 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 MLPHQ9BV36 600 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 CDH19Q9H159 772 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 PRORYQ9H606 182 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 ASCL3Q9NQ33 180 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 TAAR2Q9P1P5 351 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 SLC17A4Q9Y2C5 497 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 RNF215Q9Y6U7 377 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 URB1O60287 2271 aaKnown RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 ACACAQ13085 2346 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 A0A0U1RQS6 177 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 C1orf232A0A0U1RR37 186 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 D6RAR5 112 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 PLD2O14939 933 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 KLK10O43240 276 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SPOPO43791 374 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 MTA2O94776 668 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 ASMTLO95671 621 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 HOXB3P14651 431 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 NOP2P46087 812 aaKnown RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 POLD2P49005 469 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 STC1P52823 247 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 TMPRSS3P57727 454 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 CXADRP78310 365 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 IFI35P80217 286 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 PPIDQ08752 370 aaKnown RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 NIPAL4Q0D2K0 466 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SOWAHCQ53LP3 525 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SLC30A9Q6PML9 568 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 RFLNAQ6ZTI6 216 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 BZW1Q7L1Q6 419 aaKnown RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 RAB11FIP2Q7L804 512 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 EXD1Q8NHP7 514 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SCAMP4Q969E2 229 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 RNF25Q96BH1 459 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 RIOK2Q9BVS4 552 aaKnown RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 FOXP3Q9BZS1 431 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 TRIM5Q9C035 493 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 BRD8Q9H0E9 1235 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SPATS2LQ9NUQ6 558 aaKnown RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 PKD2L2Q9NZM6 624 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 AKAP7Q9P0M2 348 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-215ENST00000515516 SEPT10Q9P0V9 454 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 TMEM98Q9Y2Y6 226 aa13.61□□□□□ -0.23
TCOF1-215ENST00000515516 TDRD6O60522 2096 aaKnown RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 A0A1W2PQM1 296 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 RGSL1A5PLK6 1076 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ANKRD66B4E2M5 251 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 CASC3O15234 703 aaKnown RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 INPP4BO15327 924 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 CLDN7O95471 211 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 FGF1P05230 155 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ITGA2BP08514 1039 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 JMJD7P0C870 316 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 AK4P27144 223 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ALDH4A1P30038 563 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 CCKBRP32239 447 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ADCY8P40145 1251 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 MAGEA1P43355 309 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 DYNLT1P63172 113 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 CTBSQ01459 385 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 MAP9Q49MG5 647 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 SLC9A4Q6AI14 798 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 CCDC70Q6NSX1 233 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 MARK2Q7KZI7 788 aaKnown RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 SPRED1Q7Z699 444 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 B3GNT8Q7Z7M8 397 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 NT5DC3Q86UY8 548 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 JAMLQ86YT9 394 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 GALNT13Q8IUC8 556 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 PLD5Q8N7P1 536 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 TMEM159Q96B96 161 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 PRR11Q96HE9 360 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 AGAP3Q96P47 875 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 SMIM14Q96QK8 99 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 OR2M4Q96R27 311 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 LYSMD1Q96S90 227 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 FAM83DQ9H4H8 585 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 WDR70Q9NW82 654 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ATXN7L1Q9ULK2 861 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-215ENST00000515516 ADAMTS20P59510 1910 aa13.6□□□□□ -0.23
TCOF1-215ENST00000515516 TEX51A0A1B0GUA7 166 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 A0A1W2PNU3 283 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 C3orf70A6NLC5 250 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 ECEL1O95672 775 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 PRLP01236 227 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 FUCA1P04066 466 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 COMTP21964 271 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 UGT1A5P35504 534 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 ACTR1BP42025 376 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 TNNT3P45378 269 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 PPM1FP49593 454 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 PDX1P52945 283 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 MAZP56270 477 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms