RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 VN1R2Q8NFZ6 395 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 ITFG1Q8TB96 612 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 HEXDCQ8WVB3 486 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 INPP5DQ92835 1189 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 SCRN2Q96FV2 425 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 CNDP1Q96KN2 507 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 MRGPRX3Q96LB0 322 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 GATA5Q9BWX5 397 aaPredicted RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 GPR63Q9BZJ6 419 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 TM6SF2Q9BZW4 377 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 P2RY12Q9H244 342 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 SUV39H2Q9H5I1 410 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 TFB2MQ9H5Q4 396 aaKnown RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 ZFYVE1Q9HBF4 777 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 TXLNGQ9NUQ3 528 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 POLR3BQ9NW08 1133 aaPredicted RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 GDE1Q9NZC3 331 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 XPR1Q9UBH6 696 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 HECAQ9UBI9 543 aaPredicted RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 HEY2Q9UBP5 337 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 FKBPLQ9UIM3 349 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 TMCO1Q9UM00 188 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 ERVW-1Q9UQF0 538 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 APOBEC2Q9Y235 224 aaKnown RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 RAP2CQ9Y3L5 183 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 PKP3Q9Y446 797 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 PCDHB1Q9Y5F3 818 aa8.35□□□□□ -1.07
RNF4-220ENST00000513578 OAS3Q9Y6K5 1087 aaKnown RBP8.35□□□□□ -1.07
RNF4-220ENST00000513578 PIKFYVEQ9Y2I7 2098 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 A0A0G2JND7 137 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 GOLGA8CPA6NN73 597 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 TK2O00142 265 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CCL22O00626 93 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 BUD23O43709 281 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 DLX3O60479 287 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CCDC22O60826 627 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 UNC5CO95185 931 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PIGNO95427 931 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 NFATC1O95644 943 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ADH1CP00326 375 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CYP17A1P05093 508 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PYGLP06737 847 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CCDC166P0CW27 439 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PKMP14618 531 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 CD1DP15813 335 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ZNF37AP17032 561 aaPredicted RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 POLR2EP19388 210 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 SAT1P21673 171 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 NFKBIAP25963 317 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ARRB2P32121 409 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 HNF1BP35680 557 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 GMPRP36959 345 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 NNMTP40261 264 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CTSOP43234 321 aaPredicted RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 NUMBP49757 651 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 RASSF2P50749 326 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CCNHP51946 323 aaPredicted RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 NCALDP61601 193 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 POLR2LP62875 67 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 PRKAA1Q13131 559 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 RCN2Q14257 317 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CSHL1Q14406 222 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ZNF460Q14592 562 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PDGFRLQ15198 375 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CTC1Q2NKJ3 1217 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 SETMARQ53H47 684 aaPredicted RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 ZNF697Q5TEC3 545 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 METTL21CQ5VZV1 264 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 GRAMD4Q6IC98 578 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PSAPL1Q6NUJ1 521 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 TMEM207Q6UWW9 146 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 NAPRTQ6XQN6 538 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ZCCHC23Q6ZST2 131 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ASRGL1Q7L266 308 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 LYSMD3Q7Z3D4 306 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PIWIL4Q7Z3Z4 852 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 SNX20Q7Z614 316 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 CLNKQ7Z7G1 428 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ISCA2Q86U28 154 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 LDB1Q86U70 411 aaPredicted RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 NPAS3Q8IXF0 933 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ETFBKMTQ8IXQ9 262 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 NKAPQ8N5F7 415 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 EFHBQ8N7U6 833 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 BPIFB1Q8TDL5 484 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 FRS2Q8WU20 508 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PPM1EQ8WY54 764 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 KCNJ9Q92806 393 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 SMARCD2Q92925 531 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 BHMTQ93088 406 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PPP2R3CQ969Q6 453 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.34□□□□□ -1.072e-6■■■■■ 54.9
RNF4-220ENST00000513578 EID2BQ96D98 161 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ERP27Q96DN0 273 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 L3HYPDHQ96EM0 354 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 PDLIM5Q96HC4 596 aaKnown RBP8.34□□□□□ -1.07
RNF4-220ENST00000513578 SCYL1Q96KG9 808 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 ASB16Q96NS5 453 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 BIRC8Q96P09 236 aa8.34□□□□□ -1.07
RNF4-220ENST00000513578 TMEM237Q96Q45 408 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms