RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TAF11Q15544 211 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 ANKRD54Q6NXT1 300 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 CPLX2Q6PUV4 134 aaKnown RBP2.64□□□□□ -1.99
NUP54-208ENST00000508604 RBMS3Q6XE24 437 aaKnown RBP2.64□□□□□ -1.99
NUP54-208ENST00000508604 GPAT4Q86UL3 456 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 OR52I2Q8NH67 350 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 THAP4Q8WY91 577 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 BBS4Q96RK4 519 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 TWNKQ96RR1 684 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.64□□□□□ -1.99
NUP54-208ENST00000508604 LMAN2LQ9H0V9 348 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 PLEKHA4Q9H4M7 779 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 MAGEE1Q9HCI5 957 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 GPR108Q9NPR9 543 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 IL1RAPL1Q9NZN1 696 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.64□□□□□ -1.99
NUP54-208ENST00000508604 RRP7AQ9Y3A4 280 aaKnown RBP2.64□□□□□ -1.99
NUP54-208ENST00000508604 PTPRCP08575 1304 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 E9PQ18 207 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 CYC1P08574 325 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 FAM106CPP0CH98 169 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 AGAP20933 346 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 POU1F1P28069 291 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 GNALP38405 381 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 RPL24P83731 157 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 FOXM1Q08050 763 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 FOXD4Q12950 439 aaPredicted RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 CUL4BQ13620 913 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 TECRLQ5HYJ1 363 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 GGNBP1Q5YKI7 109 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 XRRA1Q6P2D8 792 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 C17orf99Q6UX52 265 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 ZNF704Q6ZNC4 412 aaPredicted RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 NOXA1Q86UR1 476 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 AMER3Q8N944 861 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 CABLES2Q9BTV7 478 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 STN1Q9H668 368 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 DDX4Q9NQI0 724 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 GEMIN8Q9NWZ8 242 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 FAM120CQ9NX05 1096 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 ADPRHL2Q9NX46 363 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 SRP68Q9UHB9 627 aaKnown RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 RASAL2Q9UJF2 1139 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 FAM96BQ9Y3D0 163 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 PEX12O00623 359 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 MAP2K2P36507 400 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 ACTR2P61160 394 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 PLIN5Q00G26 463 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 TRIM65Q6PJ69 517 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 PLEKHM3Q6ZWE6 761 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 TADA2BQ86TJ2 420 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 SPATA6LQ8N4H0 392 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 OR2AK2Q8NG84 335 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 AFG1LQ8WV93 481 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 ARHGEF26Q96DR7 871 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 NEUROD6Q96NK8 337 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 IWS1Q96ST2 819 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 MPHOSPH8Q99549 860 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 TWSG1Q9GZX9 223 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 NOD2Q9HC29 1040 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 BEX4Q9NWD9 120 aaPredicted RBP2.63□□□□□ -1.99
NUP54-208ENST00000508604 BARHL2Q9NY43 387 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 CTNNAL1Q9UBT7 734 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 JRKLQ9Y4A0 524 aa2.63□□□□□ -1.99
NUP54-208ENST00000508604 CTAGE9A4FU28 777 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 CTSVO60911 334 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 MT-CYBP00156 380 aaPredicted RBP2.62□□□□□ -1.99
NUP54-208ENST00000508604 TK1P04183 234 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 CD48P09326 243 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 IFIT2P09913 472 aaKnown RBP2.62□□□□□ -1.99
NUP54-208ENST00000508604 CTAGE8P0CG41 777 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 SETSIPP0DME0 302 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 AHRP35869 848 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 KRTAP10-8P60410 259 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 TUBB2AQ13885 445 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 DUS1LQ6P1R4 473 aaKnown RBP2.62□□□□□ -1.99
NUP54-208ENST00000508604 MYLK4Q86YV6 388 aaPredicted RBP2.62□□□□□ -1.99
NUP54-208ENST00000508604 CTAGE4Q8IX94 777 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 ZBTB2Q8N680 514 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 FCAMRQ8WWV6 532 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 MOCOSQ96EN8 888 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 ZNF414Q96IQ9 312 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 TUBB2BQ9BVA1 445 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 MROH8Q9H579 483 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 PPP1R3EQ9H7J1 279 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 SNTG1Q9NSN8 517 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 KIAA1456Q9P272 454 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 KIF17Q9P2E2 1029 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 CHPF2Q9P2E5 772 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 PEMTQ9UBM1 199 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 CACNG5Q9UF02 275 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 ACSL5Q9ULC5 683 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 TP53TG3Q9ULZ0 132 aa2.62□□□□□ -1.99
NUP54-208ENST00000508604 NCAM2O15394 837 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 PLA2G4BP0C869 781 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 MLLT10P55197 1068 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 KCNJ10P78508 379 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 GRIK3Q13003 919 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 HIST2H2ACQ16777 129 aaPredicted RBP2.61□□□□□ -1.99
NUP54-208ENST00000508604 CCDC38Q502W7 563 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms