RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 MIA3Q5JRA6 1907 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 SDK1Q7Z5N4 2213 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ZNF292O60281 2723 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 NUP210Q8TEM1 1887 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 SYNJ2BP-COX16A0A087WUM0 186 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 A0A1W2PR48 441 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 GTPBP10A4D1E9 387 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 PRRT4C9JH25 899 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 E5RJQ4 531 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SGK1O00141 431 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 EPHB6O15197 1021 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 HOXC11O43248 304 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 PAPSS1O43252 624 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 MED7O43513 233 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ATG13O75143 517 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 RBMXL2O75526 392 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 GFPT2O94808 682 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 MATN4O95460 622 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 MBD3O95983 291 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 APODP05090 189 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CFIP05156 583 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CISD3P0C7P0 127 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 JMJD7P0C870 316 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ATP1A3P13637 1013 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 KRT9P35527 623 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 TNFRSF4P43489 277 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 HARS2P49590 506 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 NUMBP49757 651 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SGSHP51688 502 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 DGKEP52429 567 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 COPB1P53618 953 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 POLR2FP61218 127 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 UBXN1Q04323 297 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 GOLGA8FQ08AF8 430 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 GOLGA8DPQ0D2H9 430 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SIM2Q14190 667 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 ZNF460Q14592 562 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SYCP1Q15431 976 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 STX1AQ16623 288 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ANO6Q4KMQ2 910 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 C2CD6Q53TS8 623 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 C10orf76Q5T2E6 689 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ANKS6Q68DC2 871 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 OR6B2Q6IFH4 312 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 C1orf228Q6PIY5 440 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 RBM43Q6ZSC3 357 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 ENOSF1Q7L5Y1 443 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 TADA2BQ86TJ2 420 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 TMEM110Q86TL2 294 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 KBTBD6Q86V97 674 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 GLB1L2Q8IW92 636 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 FAM71AQ8IYT1 594 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CFAP52Q8N1V2 620 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SYNPOQ8N3V7 929 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 DEFB119Q8N690 84 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 IL17RCQ8NAC3 791 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ZBTB44Q8NCP5 570 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 DDI1Q8WTU0 396 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SLC20A1Q8WUM9 679 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 RLN3Q8WXF3 142 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 SHC3Q92529 594 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 FAM149B1Q96BN6 582 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 PIWIL1Q96J94 861 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 PPP1R13BQ96KQ4 1090 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 HSFY1Q96LI6 401 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CLUHP3Q96NS8 147 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CPXM1Q96SM3 734 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 NAA15Q9BXJ9 866 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 TPSD1Q9BZJ3 242 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 DCLK3Q9C098 648 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 HSD3B7Q9H2F3 369 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 PDCL3Q9H2J4 239 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 FAM124BQ9H5Z6 455 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 NLRC4Q9NPP4 1024 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 CNGB3Q9NQW8 809 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 ABCC13Q9NSE7 274 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 FAM207AQ9NSI2 230 aaPredicted RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 COX16Q9P0S2 106 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 XPO7Q9UIA9 1087 aaKnown RBP4.69□□□□□ -1.66
NUP54-206ENST00000508465 PCDHGA2Q9Y5H1 932 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 NOX1Q9Y5S8 564 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 DCHS1Q96JQ0 3298 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 COL4A2P08572 1712 aa4.69□□□□□ -1.66
NUP54-206ENST00000508465 RIF1Q5UIP0 2472 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 GPR179Q6PRD1 2367 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 DNAJC9-AS1A6NH13 148 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 MARCH11A6NNE9 402 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 GOLGA8SH3BPF8 625 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 CAPN9O14815 690 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 TEX33O43247 280 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 TBL1XO60907 577 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 DNAJC8O75937 253 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 APBB3O95704 486 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 MOCS2O96007 188 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 LTA4HP09960 611 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 UCHL3P15374 230 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 CHRNB2P17787 502 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 EEF1GP26641 437 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 SLC6A4P31645 630 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 ACADSBP45954 432 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms