RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 POLR1EQ9GZS1 481 aaKnown RBP20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 EPB41L1Q9H4G0 881 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 CFAP46Q8IYW2 2715 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 SMTNL1A8MU46 457 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 ATMINO43313 823 aaPredicted RBP20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 SUV39H1O43463 412 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 LRCH4O75427 683 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 PGLSO95336 258 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 AK4P27144 223 aaPredicted RBP20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 KLHL30Q0D2K2 578 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 KRT81Q14533 505 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 CEACAM20Q6UY09 585 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 ADAMTSL4Q6UY14 1074 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 RBM43Q6ZSC3 357 aaKnown RBP20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 Q6ZVL8 140 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 IRF2BP2Q7Z5L9 587 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 NLRP8Q86W28 1048 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 RCBTB1Q8NDN9 531 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 EXD1Q8NHP7 514 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 HSPH1Q92598 858 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 ART4Q93070 314 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 NKD1Q969G9 470 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 MCCC1Q96RQ3 725 aaPredicted RBP20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 NOD2Q9HC29 1040 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 MYO1AQ9UBC5 1043 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 AMACRQ9UHK6 382 aa20.95■□□□□ 0.94
SQSTM1-210ENST00000506042 IGHV1OR21-1A0A087WYE8 117 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 TERTO14746 1132 aaKnown RBP20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 ASMTLO95671 621 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 CCL4P13236 92 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 MAP4P27816 1152 aaKnown RBP20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 FASLGP48023 281 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 SEPT6Q14141 434 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 HADHQ16836 314 aaKnown RBP20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 CCDC122Q5T0U0 273 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 KCTD16Q68DU8 428 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 ARHGAP36Q6ZRI8 547 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 HSD11B1LQ7Z5J1 315 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 NRROSQ86YC3 692 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 NAGSQ8N159 534 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 TEKT4Q8WW24 435 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 PEBP4Q96S96 227 aa20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 GPN2Q9H9Y4 310 aaPredicted RBP20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 RCOR3Q9P2K3 495 aaPredicted RBP20.94■□□□□ 0.94
SQSTM1-210ENST00000506042 NPIPB15A6NHN6 443 aaPredicted RBP20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 LRRC53A6NM62 1247 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 THRAP10827 490 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 FGF3P11487 239 aaPredicted RBP20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 GM2AP17900 193 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 CR2P20023 1033 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 UGT1A3P35503 534 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 KCNAB2Q13303 367 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 CLEC17AQ6ZS10 378 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 SLC9B2Q86UD5 537 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 CCHCR1Q8TD31 782 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 JPH3Q8WXH2 748 aaPredicted RBP20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 TRIM4Q9C037 500 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 HAUS4Q9H6D7 363 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 RMI1Q9H9A7 625 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 TAS2R14Q9NYV8 317 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 VPS18Q9P253 973 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 IP6K2Q9UHH9 426 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 PPIL1Q9Y3C6 166 aa20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 BZW2Q9Y6E2 419 aaKnown RBP20.93■□□□□ 0.94
SQSTM1-210ENST00000506042 OR5K4A6NMS3 321 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 EFCAB7A8K855 629 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 RAD1O60671 282 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 MAFKO60675 156 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 MBD3O95983 291 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 RPL26P61254 145 aaKnown RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 HHEXQ03014 270 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 TRAF2Q12933 501 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 CYB5D1Q6P9G0 228 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 WDR74Q6RFH5 385 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 NYAP1Q6ZVC0 841 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 TMPRSS9Q7Z410 1059 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 KDELC2Q7Z4H8 507 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 POLNQ7Z5Q5 900 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 NLGN4XQ8N0W4 816 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 NLGN4YQ8NFZ3 816 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 ZNF564Q8TBZ8 553 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 SCARF2Q96GP6 870 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 CSPG4P5Q96PW8 444 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 HERPUD2Q9BSE4 406 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 NT5MQ9NPB1 228 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 LMBRD1Q9NUN5 540 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 AIPL1Q9NZN9 384 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 ZNHIT2Q9UHR6 403 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 ANAPC2Q9UJX6 822 aa20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 RPL26L1Q9UNX3 145 aaKnown RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 ARHGEF17Q96PE2 2063 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-210ENST00000506042 PYCARD-AS1I3L0S3 204 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 ITGB6P18564 788 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 AMPD1P23109 780 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 PRKCIP41743 596 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 SSR1P43307 286 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 ZNF165P49910 485 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 EPHA4P54764 986 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms