RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 EML2O95834 649 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 IVLP07476 585 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 ELAVL4P26378 380 aaKnown RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 ERCC5P28715 1186 aaPredicted RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 SDC4P31431 198 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 PPM1FP49593 454 aaPredicted RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 BPIFB4P59827 614 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 MRPL49Q13405 166 aaKnown RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 DPY19L2P1Q6NXN4 242 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 STRADAQ7RTN6 431 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 APLFQ8IW19 511 aaPredicted RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 SFRP1Q8N474 314 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 TSEN2Q8NCE0 465 aaKnown RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 CPA5Q8WXQ8 436 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 NTAN1Q96AB6 310 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 SCARF2Q96GP6 870 aaPredicted RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 TCTN2Q96GX1 697 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 B4GALT6Q9UBX8 382 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 C2CD4BA6NLJ0 364 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 WASH4PA8MWX3 477 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 PTPN9P43378 593 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 NOMO3P69849 1222 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 PAK1Q13153 545 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 SEMA5AQ13591 1074 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 CNGA3Q16281 694 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 PRR30Q53SZ7 412 aaPredicted RBP16.39■□□□□ 0.21
VIM-208ENST00000497849 C1QL3Q5VWW1 255 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 RBM43Q6ZSC3 357 aaKnown RBP16.39■□□□□ 0.21
VIM-208ENST00000497849 SRRM1Q8IYB3 904 aaKnown RBP16.39■□□□□ 0.21
VIM-208ENST00000497849 CBARPQ8N350 705 aaPredicted RBP16.39■□□□□ 0.21
VIM-208ENST00000497849 FAM172AQ8WUF8 416 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 NCSTNQ92542 709 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 PHF12Q96QT6 1004 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 ULBP3Q9BZM4 244 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 LRRC19Q9H756 370 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 KLHL3Q9UH77 587 aa16.39■□□□□ 0.21
VIM-208ENST00000497849 ERRFI1Q9UJM3 462 aaPredicted RBP16.39■□□□□ 0.21
VIM-208ENST00000497849 PRAMEF11O60813 436 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 KATNA1O75449 491 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 MAP3K6O95382 1288 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 LSM8O95777 96 aaKnown RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 LDLRP01130 860 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 ETV3P41162 512 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 POLR2LP62875 67 aaKnown RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 BCL2L1Q07817 233 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 INPP5JQ15735 1006 aaPredicted RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 NAA35Q5VZE5 725 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 DOK6Q6PKX4 331 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 C6orf15Q6UXA7 325 aaPredicted RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 NOP9Q86U38 636 aaKnown RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 GALNT6Q8NCL4 622 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 DTD2Q96FN9 168 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 OR2M4Q96R27 311 aa16.38■□□□□ 0.21
VIM-208ENST00000497849 RCOR3Q9P2K3 495 aaPredicted RBP16.38■□□□□ 0.21
VIM-208ENST00000497849 CREG1O75629 220 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 TEAD1P28347 426 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 NOP2P46087 812 aaKnown RBP16.37■□□□□ 0.21
VIM-208ENST00000497849 DPCR1Q3MIW9 517 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 PYCR3Q53H96 274 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 DENND2CQ68D51 928 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 HSD11B1LQ7Z5J1 315 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 SLFN11Q7Z7L1 901 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 CREBRFQ8IUR6 639 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 MSANTD4Q8NCY6 345 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 PRR7Q8TB68 274 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 ANP32EQ9BTT0 268 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 TWSG1Q9GZX9 223 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 ZNF768Q9H5H4 540 aaKnown RBP16.37■□□□□ 0.21
VIM-208ENST00000497849 MLXIPLQ9NP71 852 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 DONSONQ9NYP3 566 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 TMEM98Q9Y2Y6 226 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 PCDHGA6Q9Y5G7 932 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 APCP25054 2843 aa16.37■□□□□ 0.21
VIM-208ENST00000497849 PIPSLA2A3N6 862 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 INPP4BO15327 924 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 CREB3O43889 395 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 HEXIM1O94992 359 aaKnown RBP16.36■□□□□ 0.21
VIM-208ENST00000497849 RECKO95980 971 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 SOD1P00441 154 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 MMEP08473 750 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 LHCGRP22888 699 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 HHEXQ03014 270 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 FOXM1Q08050 763 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 NFATC2Q13469 925 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 RAET1GQ6H3X3 334 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 SASS6Q6UVJ0 657 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 PAF1Q8N7H5 531 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 FNIP1Q8TF40 1166 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 SPOCK2Q92563 424 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 CELF6Q96J87 481 aaKnown RBP16.36■□□□□ 0.21
VIM-208ENST00000497849 CATSPERBQ9H7T0 1116 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 SARS2Q9NP81 518 aaKnown RBP16.36■□□□□ 0.21
VIM-208ENST00000497849 KCND3Q9UK17 655 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 F8P00451 2351 aa16.36■□□□□ 0.21
VIM-208ENST00000497849 SYCE3A1L190 88 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 GOLGA6CA6NDK9 693 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 GOLGA6BA6NDN3 693 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 PALMO75781 387 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 FGFR1OPO95684 399 aaKnown RBP16.35■□□□□ 0.21
VIM-208ENST00000497849 ANKRD34CP0C6C1 535 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms