RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 TTC16Q8NEE8 873 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 OR13J1Q8NGT2 312 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 CFAP61Q8NHU2 1237 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 PHOSPHO2Q8TCD6 241 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 MAGEC3Q8TD91 643 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 NXNL1Q96CM4 212 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 ZNF419Q96HQ0 510 aaPredicted RBP6.92□□□□□ -1.3
USP39-219ENST00000496047 DNAJC1Q96KC8 554 aaKnown RBP6.92□□□□□ -1.3
USP39-219ENST00000496047 TBATAQ96M53 351 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 SAMD11Q96NU1 681 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 TCF25Q9BQ70 676 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 CORO1BQ9BR76 489 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 MCMBPQ9BTE3 642 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 ATP13A3Q9H7F0 1226 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 NOD2Q9HC29 1040 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 TCF7L2Q9NQB0 619 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 TLR9Q9NR96 1032 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 GKN1Q9NS71 199 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 GTSE1Q9NYZ3 720 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 CFAP97Q9P2B7 532 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 CPSF2Q9P2I0 782 aaKnown RBP6.92□□□□□ -1.3
USP39-219ENST00000496047 TBC1D14Q9P2M4 693 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 BCAP29Q9UHQ4 241 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 TRMT6Q9UJA5 497 aaKnown RBP6.92□□□□□ -1.3
USP39-219ENST00000496047 APPL1Q9UKG1 709 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 PCDHB11Q9Y5F2 797 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 PCDHB1Q9Y5F3 818 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 RAI2Q9Y5P3 530 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 SLC4A7Q9Y6M7 1214 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 LRRK1Q38SD2 2015 aa6.92□□□□□ -1.3
USP39-219ENST00000496047 NOTCH4Q99466 2003 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TRIM43BA6NCK2 446 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ANKRD66B4E2M5 251 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 G3V2L1 256 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 H3BMM5 538 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 H3BNC9 293 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ZNF197O14709 1029 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 LYPLA1O75608 230 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 IPO13O94829 963 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 PIGNO95427 931 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CBX6O95503 412 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TOP3BO95985 862 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 KLKB1P03952 638 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 KRT16P08779 473 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CNPP09543 421 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 HNRNPA1P09651 372 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP39-219ENST00000496047 ACRP10323 421 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 PTPN2P17706 415 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TFEBP19484 476 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 AOC1P19801 751 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CR2P20023 1033 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ITGALP20701 1170 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 FDXRP22570 491 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 MC4RP32245 332 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 RECQLP46063 649 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 CSNK1DP48730 415 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ZNF140P52738 457 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 COPAP53621 1224 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 KCNJ2P63252 427 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 IRX1P78414 480 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 ARF5P84085 180 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 PFKPQ01813 784 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 GALNT1Q10472 559 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 ELOAQ14241 798 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 DMC1Q14565 340 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CYTH1Q15438 398 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CCDC6Q16204 474 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 GEN1Q17RS7 908 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 OXLD1Q5BKU9 147 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ARTNQ5T4W7 220 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 GPR158Q5T848 1215 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 PLPP4Q5VZY2 271 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ZDHHC20Q5W0Z9 365 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TXNDC8Q6A555 127 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 NXNQ6DKJ4 435 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 NCEH1Q6PIU2 408 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TXNDC11Q6PKC3 985 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 C16orf89Q6UX73 402 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 USP45Q70EL2 814 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 FRA10AC1Q70Z53 315 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ALYREFQ86V81 257 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 CENPLQ8N0S6 344 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 RYBPQ8N488 228 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 KIF2BQ8N4N8 673 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CCNYL1Q8N7R7 359 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 KLHL23Q8NBE8 558 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 OR4K2Q8NGD2 314 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 OR13C4Q8NGS5 318 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 RHEBL1Q8TAI7 183 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 MICAL1Q8TDZ2 1067 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 AUTS2Q8WXX7 1259 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CLP1Q92989 425 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 TRIM43Q96BQ3 446 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 OTUB2Q96DC9 234 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CDKN2AIPNLQ96HQ2 116 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 EXOC2Q96KP1 924 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 CDK15Q96Q40 435 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TUBGCP5Q96RT8 1024 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 TRIB3Q96RU7 358 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 SERPINI1Q99574 410 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms