RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TRPC3Q13507 836 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 ZNF239Q16600 458 aaKnown RBP3.68□□□□□ -1.82
VPS50-219ENST00000495039 MMEL1Q495T6 779 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 SIRPB2Q5JXA9 342 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 WDR45BQ5MNZ6 344 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 ATG16L1Q676U5 607 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 C15orf39Q6ZRI6 1047 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 APLFQ8IW19 511 aaPredicted RBP3.68□□□□□ -1.82
VPS50-219ENST00000495039 WDR20Q8TBZ3 569 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 CD180Q99467 661 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 STN1Q9H668 368 aaKnown RBP3.68□□□□□ -1.82
VPS50-219ENST00000495039 C9orf78Q9NZ63 289 aaPredicted RBP3.68□□□□□ -1.82
VPS50-219ENST00000495039 SH2D7A6NKC9 451 aaPredicted RBP3.67□□□□□ -1.82
VPS50-219ENST00000495039 IFIT1P09914 478 aaKnown RBP3.67□□□□□ -1.82
VPS50-219ENST00000495039 XBP1P17861 261 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 PGM1P36871 562 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 DCTP40126 519 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 CCR5P51681 352 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 KRTAP12-2P59991 146 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 EEF1A1P68104 462 aaKnown RBP3.67□□□□□ -1.82
VPS50-219ENST00000495039 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.67□□□□□ -1.82
VPS50-219ENST00000495039 TCTE1Q5JU00 501 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 EEF1A1P5Q5VTE0 462 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 ATF7IPQ6VMQ6 1270 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 SLC36A4Q6YBV0 504 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 P2RY8Q86VZ1 359 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 FOXRED2Q8IWF2 684 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 TMEM190Q8WZ59 177 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 HVCN1Q96D96 273 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 SCRN2Q96FV2 425 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 ART5Q96L15 291 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 LINC00479Q96M42 142 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 TBATAQ96M53 351 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 SYT17Q9BSW7 474 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 POLR3CQ9BUI4 534 aaPredicted RBP3.67□□□□□ -1.82
VPS50-219ENST00000495039 TRIM15Q9C019 465 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 TAOK3Q9H2K8 898 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 UPF2Q9HAU5 1272 aaKnown RBP3.67□□□□□ -1.82
VPS50-219ENST00000495039 ALKBH4Q9NXW9 302 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 GGA3Q9NZ52 723 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 SLC13A4Q9UKG4 626 aa3.67□□□□□ -1.82
VPS50-219ENST00000495039 A0A0J9YWU9 116 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 C17orf113A0A1B0GUU1 675 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 HOXC11O43248 304 aaPredicted RBP3.66□□□□□ -1.82
VPS50-219ENST00000495039 ARHGEF9O43307 516 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 GUCY1B2O75343 617 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 MYOD1P15172 320 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 RRM1P23921 792 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 KRT9P35527 623 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 KRTAP10-8P60410 259 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 VAMP2P63027 116 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 NAA25Q14CX7 972 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 KRT24Q2M2I5 525 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 GPATCH4Q5T3I0 446 aaKnown RBP3.66□□□□□ -1.82
VPS50-219ENST00000495039 LRRC8DQ7L1W4 858 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 TAOK1Q7L7X3 1001 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 CPXM2Q8N436 756 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 STPG4Q8N801 248 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 OPRPNQ99935 248 aaPredicted RBP3.66□□□□□ -1.82
VPS50-219ENST00000495039 CDK19Q9BWU1 502 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 CHMP4AQ9BY43 222 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 GPR63Q9BZJ6 419 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 ERVMER34-1Q9H9K5 563 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 SLC52A3Q9NQ40 469 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 MAP3K20Q9NYL2 800 aaKnown RBP3.66□□□□□ -1.82
VPS50-219ENST00000495039 CNOT7Q9UIV1 285 aaKnown RBP3.66□□□□□ -1.82
VPS50-219ENST00000495039 RCOR1Q9UKL0 485 aa3.66□□□□□ -1.82
VPS50-219ENST00000495039 CCDC196A0A1B0GTZ2 297 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 PSMD14O00487 310 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 KLK8O60259 260 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 SLC2A4P14672 509 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 PSMC2P35998 433 aaKnown RBP3.65□□□□□ -1.83
VPS50-219ENST00000495039 EFNA5P52803 228 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 RAD23BP54727 409 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 NFIL3Q16649 462 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ALFQ53S48 1182 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 FAAP20Q6NZ36 180 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ASB18Q6ZVZ8 466 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ADGRG6Q86SQ4 1221 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 TMTC1Q8IUR5 882 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ZNF34Q8IZ26 560 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ESX1Q8N693 406 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 NOC3LQ8WTT2 800 aaKnown RBP3.65□□□□□ -1.83
VPS50-219ENST00000495039 FAM222BQ8WU58 562 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 CNOT9Q92600 299 aaKnown RBP3.65□□□□□ -1.83
VPS50-219ENST00000495039 STAMBPL1Q96FJ0 436 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ZNF570Q96NI8 536 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 MXRA8Q9BRK3 442 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 MROH8Q9H579 483 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 ZDHHC18Q9NUE0 388 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 PDP2Q9P2J9 529 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 GJD2Q9UKL4 321 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 DLGAP4Q9Y2H0 992 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 CRYL1Q9Y2S2 319 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 OR2W1Q9Y3N9 320 aa3.65□□□□□ -1.83
VPS50-219ENST00000495039 FAM90A7PA6NKC0 464 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 FAM90A22PA8MWA6 464 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 FAM90A12PA8MX19 464 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 FAM90A23PA8MXZ1 464 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms