RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GNA12Q03113 381 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KCNJ11Q14654 390 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 METTL21CQ5VZV1 264 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CGB2Q6NT52 195 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ANKS3Q6ZW76 656 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DHRSXQ8N5I4 330 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MYLIPQ8WY64 445 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HEPHQ9BQS7 1158 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DGCR6LQ9BY27 220 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 WDR41Q9HAD4 459 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ABCB10Q9NRK6 738 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC8A2Q9UPR5 921 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRU2 124 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HACD1B0YJ81 288 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GSTA4O15217 222 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 B4GALT3O60512 393 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 H6PDO95479 791 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GLP2RO95838 553 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AMHP03971 560 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ALOX5P09917 674 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UGP2Q16851 508 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF829Q3KNS6 432 aaPredicted RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TIGD7Q6NT04 549 aaPredicted RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AKAP14Q86UN6 197 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TDRD5Q8NAT2 981 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OR13C4Q8NGS5 318 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NXNL1Q96CM4 212 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SUSD3Q96L08 255 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MRPL17Q9NRX2 175 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CRLS1Q9UJA2 301 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DNMT3LQ9UJW3 386 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ITM2BQ9Y287 266 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 K7EPI3 171 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RAD51BO15315 384 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CXCL14O95715 111 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CYBBP04839 570 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ENO2P09104 434 aaPredicted RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GLDCP23378 1020 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PSMA4P25789 261 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CDK9P50750 372 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 WASHC5Q12768 1159 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF846Q147U1 533 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PFKFB4Q16877 469 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ADGRD1Q6QNK2 874 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ANGPTL8Q6UXH0 198 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 POC5Q8NA72 575 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DCAKDQ8WVC6 231 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ULK4Q96C45 1275 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CIB1Q99828 191 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCDHB12Q9Y5F1 795 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ARL5AQ9Y689 179 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TEX264Q9Y6I9 313 aa10.74□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRIOBPQ9H2D6 2365 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PSMD11O00231 422 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SNPHO15079 494 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TIMM44O43615 452 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CCL5P13501 91 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LRPAP1P30533 357 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TUBA4AP68366 448 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ELAVL2Q12926 359 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PTPRRQ15256 657 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PABPC1LQ4VXU2 614 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C6orf10Q5SRN2 563 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SEL1L3Q68CR1 1132 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC9A4Q6AI14 798 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCDH20Q8N6Y1 951 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HTRA1Q92743 480 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CITED4Q96RK1 184 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NAT9Q9BTE0 207 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 POLR1EQ9GZS1 481 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IL22Q9GZX6 179 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MTMR10Q9NXD2 777 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRHDEQ9UKU6 1024 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HEATR9A2RTY3 570 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FUOMA2VDF0 154 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCP4L1A6NKN8 68 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PDZK1P1A8MUH7 402 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ADAMTS4O75173 837 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CTNNB1P35222 781 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FUT11Q495W5 492 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PPM1LQ5SGD2 360 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DRICH1Q6PGQ1 229 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CNSTQ6PJW8 725 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TDRPQ86YL5 185 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF555Q8NEP9 628 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OR4K2Q8NGD2 314 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PRR11Q96HE9 360 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SIGLEC10Q96LC7 697 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ACE2Q9BYF1 805 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EHD1Q9H4M9 534 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SEMA4BQ9NPR2 832 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMEM161AQ9NX61 479 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CCDC167Q9P0B6 97 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FBXO9Q9UK97 447 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RABL2BQ9UNT1 228 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PKP3Q9Y446 797 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF831Q5JPB2 1677 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SCAMP1O15126 338 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TBC1D4O60343 1298 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms