RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 HAUS1Q96CS2 278 aa15.04■□□□□ -0
USP39-217ENST00000491659 CCDC3Q9BQI4 270 aa15.04■□□□□ -0
USP39-217ENST00000491659 GSDMCQ9BYG8 508 aa15.04■□□□□ -0
USP39-217ENST00000491659 FRMD8Q9BZ67 464 aaPredicted RBP15.04■□□□□ -0
USP39-217ENST00000491659 SYNDIG1Q9H7V2 258 aa15.04■□□□□ -0
USP39-217ENST00000491659 GLOD4Q9HC38 313 aa15.04■□□□□ -0
USP39-217ENST00000491659 IMPACTQ9P2X3 320 aa15.04■□□□□ -0
USP39-217ENST00000491659 SAE1Q9UBE0 346 aaPredicted RBP15.04■□□□□ -0
USP39-217ENST00000491659 REXO2Q9Y3B8 237 aaKnown RBP15.04■□□□□ -0
USP39-217ENST00000491659 B4DGG1 531 aa15.03■□□□□ -0
USP39-217ENST00000491659 CEACAM5P06731 702 aa15.03■□□□□ -0
USP39-217ENST00000491659 TNNT3P45378 269 aaPredicted RBP15.03■□□□□ -0
USP39-217ENST00000491659 COPS2P61201 443 aa15.03■□□□□ -0
USP39-217ENST00000491659 ILF3Q12906 894 aaKnown RBP eCLIP15.03■□□□□ -0
USP39-217ENST00000491659 RTP5Q14D33 572 aa15.03■□□□□ -0
USP39-217ENST00000491659 CCDC181Q5TID7 509 aa15.03■□□□□ -0
USP39-217ENST00000491659 CCDC70Q6NSX1 233 aa15.03■□□□□ -0
USP39-217ENST00000491659 RFLNAQ6ZTI6 216 aa15.03■□□□□ -0
USP39-217ENST00000491659 ZC3H18Q86VM9 953 aaKnown RBP15.03■□□□□ -0
USP39-217ENST00000491659 NLRP8Q86W28 1048 aa15.03■□□□□ -0
USP39-217ENST00000491659 KIAA1524Q8TCG1 905 aa15.03■□□□□ -0
USP39-217ENST00000491659 TEKT5Q96M29 485 aa15.03■□□□□ -0
USP39-217ENST00000491659 RIOK2Q9BVS4 552 aaKnown RBP15.03■□□□□ -0
USP39-217ENST00000491659 KLHL8Q9P2G9 620 aaPredicted RBP15.03■□□□□ -0
USP39-217ENST00000491659 SUFUQ9UMX1 484 aa15.03■□□□□ -0
USP39-217ENST00000491659 RAXQ9Y2V3 346 aa15.03■□□□□ -0
USP39-217ENST00000491659 PCDHB1Q9Y5F3 818 aa15.03■□□□□ -0
USP39-217ENST00000491659 SCN8AQ9UQD0 1980 aa15.03■□□□□ -0
USP39-217ENST00000491659 ZFC3H1O60293 1989 aaKnown RBP15.02■□□□□ -0
USP39-217ENST00000491659 CCDC66A2RUB6 948 aa15.02■□□□□ -0
USP39-217ENST00000491659 RGSL1A5PLK6 1076 aa15.02■□□□□ -0
USP39-217ENST00000491659 HACD1B0YJ81 288 aa15.02■□□□□ -0
USP39-217ENST00000491659 PJA2O43164 708 aa15.02■□□□□ -0
USP39-217ENST00000491659 TCEA3O75764 348 aa15.02■□□□□ -0
USP39-217ENST00000491659 SOD1P00441 154 aa15.02■□□□□ -0
USP39-217ENST00000491659 IVLP07476 585 aa15.02■□□□□ -0
USP39-217ENST00000491659 CTNNA2P26232 953 aa15.02■□□□□ -0
USP39-217ENST00000491659 CDK18Q07002 472 aa15.02■□□□□ -0
USP39-217ENST00000491659 ADCY2Q08462 1091 aa15.02■□□□□ -0
USP39-217ENST00000491659 PEX6Q13608 980 aa15.02■□□□□ -0
USP39-217ENST00000491659 SPIDRQ14159 915 aa15.02■□□□□ -0
USP39-217ENST00000491659 RBM44Q6ZP01 1051 aaKnown RBP15.02■□□□□ -0
USP39-217ENST00000491659 BBS12Q6ZW61 710 aa15.02■□□□□ -0
USP39-217ENST00000491659 LYSMD3Q7Z3D4 306 aa15.02■□□□□ -0
USP39-217ENST00000491659 SPC24Q8NBT2 197 aa15.02■□□□□ -0
USP39-217ENST00000491659 CCDC74AQ96AQ1 378 aa15.02■□□□□ -0
USP39-217ENST00000491659 HIC2Q96JB3 615 aa15.02■□□□□ -0
USP39-217ENST00000491659 QKIQ96PU8 341 aaKnown RBP eCLIP15.02■□□□□ -0
USP39-217ENST00000491659 TRIB3Q96RU7 358 aa15.02■□□□□ -0
USP39-217ENST00000491659 VAT1Q99536 393 aa15.02■□□□□ -0
USP39-217ENST00000491659 HEMGNQ9BXL5 484 aa15.02■□□□□ -0
USP39-217ENST00000491659 CDH19Q9H159 772 aa15.02■□□□□ -0
USP39-217ENST00000491659 DPEP2Q9H4A9 486 aa15.02■□□□□ -0
USP39-217ENST00000491659 ZFYVE1Q9HBF4 777 aa15.02■□□□□ -0
USP39-217ENST00000491659 TRNAU1APQ9NX07 287 aaKnown RBP15.02■□□□□ -0
USP39-217ENST00000491659 SLC17A4Q9Y2C5 497 aa15.02■□□□□ -0
USP39-217ENST00000491659 PCDHA3Q9Y5H8 950 aa15.02■□□□□ -0
USP39-217ENST00000491659 WDFY3Q8IZQ1 3526 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 ASXL3Q9C0F0 2248 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 RP1P56715 2156 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 MACROD2A1Z1Q3 448 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 APOC4-APOC2K7ER74 178 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 INPP4BO15327 924 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 USP12O75317 370 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 PMPCBO75439 489 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 MT-CYBP00156 380 aaPredicted RBP15.01□□□□□ -0.01
USP39-217ENST00000491659 APOC2P02655 101 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 SLC4A1P02730 911 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 NFKB1P19838 968 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 CETN2P41208 172 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 POLD2P49005 469 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 SPINT3P49223 89 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 RWDD2BP57060 319 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 KIF5AQ12840 1032 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 ISXQ2M1V0 245 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 C14orf28Q4W4Y0 310 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 FAM182AQ5T1J6 154 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 KDELC2Q7Z4H8 507 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 TRIM74Q86UV6 250 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 TMEM139Q8IV31 216 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 GPR156Q8NFN8 814 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 SPATA22Q8NHS9 363 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 CCL4L1Q8NHW4 92 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 GPBAR1Q8TDU6 330 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 HTR3CQ8WXA8 447 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 TADA1Q96BN2 335 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 GRAMD1AQ96CP6 724 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 OR2M4Q96R27 311 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 SRPK1Q96SB4 655 aaKnown RBP15.01□□□□□ -0.01
USP39-217ENST00000491659 AGAP2Q99490 1192 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 FERMT1Q9BQL6 677 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 LACRTQ9GZZ8 138 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 FAM83DQ9H4H8 585 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 RAD18Q9NS91 495 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 FAM153AQ9UHL3 310 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 ZNF711Q9Y462 761 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 DUSP10Q9Y6W6 482 aa15.01□□□□□ -0.01
USP39-217ENST00000491659 KNTC1P50748 2209 aa15□□□□□ -0.01
USP39-217ENST00000491659 GRID2IPA4D2P6 1211 aa15□□□□□ -0.01
USP39-217ENST00000491659 H7C0C1 242 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms