RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 RCN3Q96D15 328 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 PPP1R16AQ96I34 528 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 DPY30Q9C005 99 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 WDR55Q9H6Y2 383 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 EURLQ9NYK6 297 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 HSFX1Q9UBD0 423 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 RIMKLBQ9ULI2 386 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 COL11A1P12107 1806 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ZCWPW2A0A1B0GU75 182 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 CCDC162PA2VCL2 907 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 IFRD1O00458 451 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 RNASEH1O60930 286 aaKnown RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 SNNO75324 88 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 GUCA1CO95843 209 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 FGBP02675 491 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ACVRL1P37023 503 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 PKNOX1P55347 436 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 SLC14A2Q15849 920 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 PLEKHG4Q58EX7 1191 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 SDE2Q6IQ49 451 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 IL27RAQ6UWB1 636 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 CYP4V2Q6ZWL3 525 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 LIMS2Q7Z4I7 341 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ARL14EPQ8N8R7 260 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 REPS1Q96D71 796 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 CDKN2AIPNLQ96HQ2 116 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 COPS8Q99627 209 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 BBS2Q9BXC9 721 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ING2Q9H160 280 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 NLE1Q9NVX2 485 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 CDH22Q9UJ99 828 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 DRGXA6NNA5 263 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 LIN7AO14910 233 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 BAIAP3O94812 1187 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 EPB42P16452 691 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 CTPS1P17812 591 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 NME5P56597 212 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 RPS24P62847 133 aaKnown RBP7.33□□□□□ -1.24
NPHP3-208ENST00000490993 HERVK_113P63132 956 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 FAM189BP81408 668 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 SEMA3BQ13214 749 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ALFQ53S48 1182 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 KLHDC10Q6PID8 442 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ARNTL2Q8WYA1 636 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 GPR21Q99679 349 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 HERC2P3Q9BVR0 1158 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ERVK-6Q9BXR3 956 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 KCTD5Q9NXV2 234 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 DLGAP2Q9P1A6 1054 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 SLC2A6Q9UGQ3 507 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 DYRK1BQ9Y463 629 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 ARL5AQ9Y689 179 aa7.33□□□□□ -1.24
NPHP3-208ENST00000490993 POP4O95707 220 aaKnown RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 PTPN2P17706 415 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ITGB6P18564 788 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CDH2P19022 906 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 RAP1GDS1P52306 607 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ATXN3P54252 364 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CACNA2D1P54289 1103 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 POLE2P56282 527 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 OLIG2Q13516 323 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CDHR3Q6ZTQ4 885 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 GALNT4Q8N4A0 578 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ZNF555Q8NEP9 628 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CASD1Q96PB1 797 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 EBF4Q9BQW3 602 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 THUMPD3Q9BV44 507 aaKnown RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 MUC13Q9H3R2 512 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CXorf56Q9H5V9 222 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 S100A14Q9HCY8 104 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ZNF358Q9NW07 568 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ARL15Q9NXU5 204 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 SNX6Q9UNH7 406 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 PCDHGC4Q9Y5F7 938 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 A8MUI8 341 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ITGB1P05556 798 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 UROSP10746 265 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 HGFP14210 728 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 EEF1B2P24534 225 aaKnown RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 FASP25445 335 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 HOXC13P31276 330 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 BIRC2Q13490 618 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 GPR33Q49SQ1 333 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ANGPTL8Q6UXH0 198 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CMTR2Q8IYT2 770 aaKnown RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 BHLHE22Q8NFJ8 381 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ZSCAN18Q8TBC5 510 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 OSCP1Q8WVF1 389 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 PSKH2Q96QS6 385 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 C11orf49Q9H6J7 331 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 HECAQ9UBI9 543 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-208ENST00000490993 ZNF711Q9Y462 761 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 SNX13Q9Y5W8 968 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 NPEPPSL1A6NEC2 478 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 DLX3O60479 287 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 MT-CO1P00395 513 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CLCQ05315 142 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 CHRNB3Q05901 458 aa7.32□□□□□ -1.24
NPHP3-208ENST00000490993 VWA5B1Q5TIE3 1220 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms