RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 HNRNPCL3B7ZW38 293 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 CETN3O15182 167 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 SLC28A2O43868 658 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 VNN1O95497 513 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 LATS1O95835 1130 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 OPN1MWP04001 364 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ASLP04424 464 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 WNT1P04628 370 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 HNRNPCL4P0DMR1 293 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 OPN1MW2P0DN77 364 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 OPN1MW3P0DN78 364 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 NME2P22392 152 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ARNTP27540 789 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 HOXD9P28356 352 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 NUDT1P36639 197 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ATP5OP48047 213 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 CASP4P49662 377 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 SLC8A3P57103 927 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 NXPH1P58417 271 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ERVPABLB-1P60509 514 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 YWHAGP61981 247 aaKnown RBP eCLIP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 TUBA1BP68363 451 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 OVGP1Q12889 678 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 BNIP3Q12983 259 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 LY6DQ14210 128 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 CST6Q15828 149 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 KBTBD12Q3ZCT8 623 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 METTL11BQ5VVY1 283 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 KAZNQ674X7 775 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 RAB12Q6IQ22 244 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 FAM47EQ6ZV65 393 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 TUBA1AQ71U36 451 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 CHST15Q7LFX5 561 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ADIPOR2Q86V24 386 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 NELFCDQ8IXH7 590 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 MFSD2AQ8NA29 543 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 GOT1L1Q8NHS2 421 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 RNF139Q8WU17 664 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 KCNE4Q8WWG9 221 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 SHC3Q92529 594 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 SGCDQ92629 289 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 FATE1Q969F0 183 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 SERAC1Q96JX3 654 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 PPP1R9BQ96SB3 815 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 TUBA1CQ9BQE3 449 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 TXLNGYQ9BZA5 131 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 DPH1Q9BZG8 443 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 UBXN6Q9BZV1 441 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 IMPG2Q9BZV3 1241 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 NEUROG2Q9H2A3 272 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 CYP3A43Q9HB55 503 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 LRRC4CQ9HCJ2 640 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ATP13A1Q9HD20 1204 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 ABCB8Q9NUT2 735 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 FAM8A1Q9UBU6 413 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 HMGXB4Q9UGU5 601 aa6.9□□□□□ -1.3
HDAC3-209ENST00000486618 HBS1LQ9Y450 684 aaKnown RBP6.9□□□□□ -1.3
HDAC3-209ENST00000486618 DOPEY2Q9Y3R5 2298 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 TARSL2A2RTX5 802 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 IKBKBO14920 756 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 KLK10O43240 276 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 TXNL1O43396 289 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 SLITRK5O94991 958 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 ASS1P00966 412 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 FAM153BP0C7A2 387 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 GOT1P17174 413 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 RHCEP18577 417 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 TFEBP19484 476 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 MAPK3P27361 379 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 GSTT1P30711 240 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 SLC8A1P32418 973 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 LSSP48449 732 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 CSRP3P50461 194 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 ALDH3A2P51648 485 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 TKTL1P51854 596 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 BLVRAP53004 296 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 CEBPZQ03701 1054 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 INCA1Q0VD86 236 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 CDK5R2Q13319 367 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 STK11Q15831 433 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 KNOP1Q1ED39 458 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 HNRNPA1L2Q32P51 320 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 ZACNQ401N2 412 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 DCAF17Q5H9S7 520 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 MPP7Q5T2T1 576 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 ADGRF1Q5T601 910 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 HHATQ5VTY9 493 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 NAPEPLDQ6IQ20 393 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 OGFOD3Q6PK18 319 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 UNC13DQ70J99 1090 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 IKBIPQ70UQ0 350 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 PRPF39Q86UA1 669 aaKnown RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 IQCHQ86VS3 1027 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 SPATA24Q86W54 205 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 CCDC117Q8IWD4 279 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 SMYD4Q8IYR2 804 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-209ENST00000486618 SLC7A5P1Q8MH63 180 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 TTC39CQ8N584 583 aa6.89□□□□□ -1.31
HDAC3-209ENST00000486618 AADATQ8N5Z0 425 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms