RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	POLR2F	P61218	127 aa	Known RBP	12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	ABHD18	Q0P651	414 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TRAF2	Q12933	501 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TPD52L1	Q16890	204 aa	Predicted RBP	12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	PYCR3	Q53H96	274 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TCP11X2	Q5H9J9	407 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	C16orf46	Q6P387	395 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TMEM135	Q86UB9	458 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TRIM74	Q86UV6	250 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	APOBEC4	Q8WW27	367 aa	Known RBP	12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	MCEE	Q96PE7	176 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	PSKH2	Q96QS6	385 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	KCTD15	Q96SI1	283 aa	Predicted RBP	12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	CINP	Q9BW66	212 aa	Predicted RBP	12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	ABCG8	Q9H221	673 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	FBXO8	Q9NRD0	319 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	TAB2	Q9NYJ8	693 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	CD84	Q9UIB8	345 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	KCNMB2	Q9Y691	235 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	LRBA	P50851	2863 aa		12.83	□□□□□ -0.36
UBR4-213	ENST00000483922	ICE1	Q9Y2F5	2266 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	ARHGAP42	A6NI28	874 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	STK17B	O94768	372 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	KRT7	P08729	469 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	NSF	P46459	744 aa	Known RBP	12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	AIF1	P55008	147 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	RAB15	P59190	212 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	IL10RB	Q08334	325 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	LACTB2	Q53H82	288 aa	Predicted RBP	12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	DOK6	Q6PKX4	331 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	TRIM72	Q6ZMU5	477 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	SFRP1	Q8N474	314 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	STARD8	Q92502	1023 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	SCAMP4	Q969E2	229 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	CNPY3	Q9BT09	278 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	NOD2	Q9HC29	1040 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	TAS2R14	Q9NYV8	317 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	SIK3	Q9Y2K2	1263 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	PRKAB1	Q9Y478	270 aa		12.82	□□□□□ -0.36
UBR4-213	ENST00000483922	PRRC2C	Q9Y520	2896 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	DFFA	O00273	331 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	EEF2K	O00418	725 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PES1	O00541	588 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	MAP3K6	O95382	1288 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PDHA1	P08559	390 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	CTPS1	P17812	591 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	TEAD1	P28347	426 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	STAT5A	P42229	794 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	GPLD1	P80108	840 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PTS	Q03393	145 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	DPT	Q07507	201 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	KLRB1	Q12918	225 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	LBR	Q14739	615 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	CRYBG3	Q68DQ2	2970 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	WDR74	Q6RFH5	385 aa	Predicted RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	RFX8	Q6ZV50	586 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	MARK2	Q7KZI7	788 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	FAM114A1	Q8IWE2	563 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PDCD6IP	Q8WUM4	868 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PIH1D2	Q8WWB5	315 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	SCRN2	Q96FV2	425 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	COX14	Q96I36	57 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	TEFM	Q96QE5	360 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	MCCC1	Q96RQ3	725 aa	Predicted RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	DPYSL5	Q9BPU6	564 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	SNRNP25	Q9BV90	132 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	TRIM7	Q9C029	511 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	DHX35	Q9H5Z1	703 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	FAM207A	Q9NSI2	230 aa	Predicted RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	ETNK2	Q9NVF9	386 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	SIDT1	Q9NXL6	827 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	TBC1D29	Q9UFV1	150 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	CNOT6	Q9ULM6	557 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	AP4E1	Q9UPM8	1137 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922	PPIL1	Q9Y3C6	166 aa		12.81	□□□□□ -0.36
UBR4-213	ENST00000483922		A6NCN8	305 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	DNAJC6	O75061	913 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	CALB1	P05937	261 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	ERCC5	P28715	1186 aa	Predicted RBP	12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	HTR7	P34969	479 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	MAX	P61244	160 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	AP1S1	P61966	158 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	NFATC2	Q13469	925 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	RFTN1	Q14699	578 aa	Predicted RBP	12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	CRTC2	Q53ET0	693 aa	Predicted RBP	12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	RAET1G	Q6H3X3	334 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	DNAJC24	Q6P3W2	148 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	ADAMTSL4	Q6UY14	1074 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	MCOLN2	Q8IZK6	566 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	CCDC112	Q8NEF3	446 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	NCSTN	Q92542	709 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	OR2M4	Q96R27	311 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	NUDCD1	Q96RS6	583 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	WDR24	Q96S15	920 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	SLC38A3	Q99624	504 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	LRRC4C	Q9HCJ2	640 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	OGFR	Q9NZT2	677 aa		12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	CWC15	Q9P013	229 aa	Known RBP	12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	PLEKHB1	Q9UF11	243 aa	Predicted RBP	12.8	□□□□□ -0.36
UBR4-213	ENST00000483922	PCSK1N	Q9UHG2	260 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms